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[181562_at]

Description B0041.2 /REP_DB=WormBase Gene ID /WP=CE27563 /TR=O02059 /GB=AAC24251.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 13      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 459.6
(-2.1)
P 		499.8
(-1.4)
P 		408.5
(-3)
P 		759.8
(3)
P 		351
B 586.3
(0.3)
P 		411.9
(-2.3)
P 		364.9
(-3)
P 		763.1
(3)
P 		398
C 601.9
(1)
P 		409.9
(-3)
P 		469
(-1.8)
P 		697.9
(3)
P 		288
avr 549.3
(-0.5) 		440.5
(-2.5) 		414.1
(-3) 		740.3
(3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 744.4
(3)
P 		658.6
(1.5)
P 		400
(-3)
P 		433.5
(-2.4)
P 		406
(-2.9)
P 		447.9
(-2.2)
P 		344
B 649.4
(3)
P 		567.3
(1)
P 		407.6
(-2.8)
P 		512.5
(-0.3)
P 		434.1
(-2.2)
P 		399.9
(-3)
P 		250
C 904.8
(3)
P 		608.5
(-0.2)
P 		492.5
(-1.5)
P 		525.2
(-1.2)
P 		502.8
(-1.4)
P 		357.5
(-3)
P 		547
avr 766.2
(3) 		611.5
(0.5) 		433.4
(-2.5) 		490.4
(-1.5) 		447.6
(-2.2) 		401.8
(-3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 167.4
(3)
P 		108.5
(-2.8)
P 		106.8
(-3)
P 		111.2
(-2.6)
P 		61
B 187
(3)
P 		101.7
(-2)
P 		84.6
(-3)
P 		162.6
(1.6)
P 		102
C 199.2
(3)
P 		117.9
(-3)
P 		163.5
(0.4)
P 		117.7
(-3)
P 		82
avr 184.5
(3) 		109.4
(-3) 		118.3
(-2.3) 		130.5
(-1.3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 137.2
(-1)
P 		234.2
(3)
P 		87.1
(-3)
P 		109.9
(-2.1)
P 		122.5
(-1.6)
P 		109
(-2.1)
P 		147
B 225.9
(3)
P 		188.8
(1.2)
P 		99
(-3)
P 		135.7
(-1.3)
P 		176.4
(0.7)
P 		149.1
(-0.6)
P 		127
C 335.4
(3)
P 		185.7
(-0.9)
P 		125.4
(-2.5)
P 		105.6
(-3)
P 		162.7
(-1.5)
P 		119.7
(-2.6)
P 		230
avr 232.8
(3) 		202.9
(1.6) 		103.8
(-3) 		117.1
(-2.4) 		153.9
(-0.7) 		125.9
(-2) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2247
Sequence Type Exemplar sequence
Representative Public ID B0041.2 NCBI
Target Description B0041.2 /REP_DB=WormBase Gene ID /WP=CE27563 /TR=O02059 /GB=AAC24251.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059019(11), NM_059020(11), NM_001025786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059019 NCBI Caenorhabditis elegans B0041.2a (B0041.2) mRNA, complete cds. 11/11 None
NM_059020 NCBI Caenorhabditis elegans B0041.2b (B0041.2) mRNA, complete cds. 11/11 None
NM_001025786 NCBI Caenorhabditis elegans B0041.2c (B0041.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016546 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4653602:4659318:1 11/11 None
SNAP00000016536 ENSEMBL cdna:SNAP chromosome:CEL140:I:4655371:4659318:1 11/11 None
B0041.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:4655348:4659318:1 gene:B0041.2 11/11 None
B0041.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:4655350:4659318:1 gene:B0041.2 11/11 None
B0041.2b ENSEMBL cdna:known chromosome:CEL140:I:4655350:4660154:1 gene:B0041.2 11/11 A 
B0041.2c ENSEMBL cdna:known chromosome:CEL140:I:4656536:4659318:1 gene:B0041.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4655370-4659318(+) 98.77 100.0
Public Domain and Genome References
Ensembl B0041.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11096 Hypothetical protein B0041.2b [Caenorhabditis elegans] ref|NP_491421.1| B0041.2b [Caenorhabditis elegans] 0.0
blast AAC24251 Hypothetical protein B0041.2a [Caenorhabditis elegans] ref|NP_491420.1| B0041.2a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181562_AT
agccgttcagaagggtcatttggatatttccctactctcacttccgcacattccgcccaa
cgtgctcgacttgctcaccgaaattttggcggtcattccgcgtttggacgactatgagga
tgagctcaaaaaattgggagaaaatcgcccttcgaactatgacgagggagccagcaaaga
ggagaaagaatcgtggatgagcaaggatcaaaagaacgatcacgacaaagcagtaatcgg
agtagtgactgcaaagatcgaggtgacacaattatctaaaaagatcaccgaagctttgat
cgaagctgggcttcttccaccacaaccacaaacatctacatctgcaaatacatctaccaa
tcatcttaatcatagaggaggaccaccgccaggatccgatggaggagctggtccaagtac
ttcacgaagtggtggaggtggtgctgctggtggagactcttttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCGTTCAGAAGGGTCATTTGGAT 28 81 1605 Antisense
ATTTGGATATTTCCCTACTCTCACT 508 17 1622 Antisense
GCTCGACTTGCTCACCGAAATTTTG 610 295 1668 Antisense
GTCATTCCGCGTTTGGACGACTATG 703 465 1696 Antisense
AAATCGCCCTTCGAACTATGACGAG 277 119 1746 Antisense
TGATCGAAGCTGGGCTTCTTCCACC 435 565 1901 Antisense
TCTACATCTGCAAATACATCTACCA 693 613 1939 Antisense
ACATCTACCAATCATCTTAATCATA 115 107 1954 Antisense
AATCATAGAGGAGGACCACCGCCAG 507 169 1972 Antisense
GGAGGAGCTGGTCCAAGTACTTCAC 80 517 2005 Antisense
GTGCTGCTGGTGGAGACTCTTTTAA 663 477 2045 Antisense
Sequence Source Affymetrix Proprietary Database