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[181561_at]

Description C16C4.1 /REP_DB=WormBase Gene ID /WP=CE08197 /TR=O44325 /GB=AAB93664.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 11.7
(-2.8)
A 		2.3
(-3)
A 		2.2
(-3)
A 		275.5
(3)
P 		273
B 2.9
(-3)
A 		27.9
(-2.3)
A 		2.5
(-3)
A 		214.8
(3)
P 		212
C 1.4
(-3)
A 		1.6
(-3)
A 		1.8
(-3)
A 		430.2
(3)
P 		429
avr 5.3
(-2.9) 		10.6
(-2.8) 		2.2
(-3) 		306.8
(3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		0.7
(-3)
A 		12.4
(-1.4)
A 		1.7
(-2.9)
A 		21.5
(-0.2)
A 		44.9
(3)
A 		44
B 2
(-3)
A 		26.7
(-1.4)
A 		1.5
(-3)
A 		2.6
(-2.9)
A 		1.7
(-3)
A 		97.4
(3)
P 		96
C 1.1
(-3)
A 		1.8
(-2.9)
A 		2.2
(-2.9)
A 		4.2
(-2.8)
A 		3
(-2.9)
A 		82.3
(3)
P 		81
avr 1.9
(-3) 		9.7
(-2.4) 		5.4
(-2.7) 		2.8
(-2.9) 		8.7
(-2.4) 		74.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 4.3
(-2.4)
A 		0.5
(-3)
A 		0.6
(-3)
A 		40.3
(3)
P 		40
B 0.9
(-3)
A 		6.9
(-2.2)
A 		0.6
(-3)
A 		45.8
(3)
P 		45
C 0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-3)
A 		72.5
(3)
P 		72
avr 1.9
(-2.9) 		2.6
(-2.8) 		0.6
(-3) 		52.9
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		0.2
(-3)
A 		2.7
(-1.6)
A 		0.4
(-2.9)
A 		6.5
(0.5)
A 		10.9
(3)
A 		11
B 0.7
(-2.9)
A 		8.9
(-1.6)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		0.7
(-2.9)
A 		36.3
(3)
P 		36
C 0.4
(-3)
A 		0.5
(-3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		1
(-2.9)
A 		27.6
(3)
P 		27
avr 0.5
(-3) 		3.2
(-2.3) 		1.2
(-2.8) 		0.6
(-3) 		2.7
(-2.5) 		24.9
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5715
Sequence Type Exemplar sequence
Representative Public ID C16C4.1 NCBI
Target Description C16C4.1 /REP_DB=WormBase Gene ID /WP=CE08197 /TR=O44325 /GB=AAB93664.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061713
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C16C4.1 ENSEMBL cdna:known chromosome:CEL140:II:1894340:1894684:1 gene:C16C4.1 None
NM_061713 NCBI Caenorhabditis elegans C16C4.1 (C16C4.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026911 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1894212-1894683(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.1
Entrez Gene 182655 Entrez gene
SwissProt O44325 EMBL-EBI
WormBase CE36788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93664 Hypothetical protein C16C4.1 [Caenorhabditis elegans] ref|NP_494114.2| C16C4.1 [Caenorhabditis elegans] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:181561_AT
gcttgtcattatctcctgggttacaactgtcggatgtagtttggttattgtaagtttaat
ttatatttttctcgatttcataattcacctttttagagtgctggtgatgctggttcaacg
gtacgcgatgacagtatcggatttacaggccaaattccagacttctatagctcggaatac
gtcaaaatttgctagttgtggcttactatcagtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGTCATTATCTCCTGGGTTACA 673 303 33 Antisense
ATCTCCTGGGTTACAACTGTCGGAT 440 33 43 Antisense
CTGTCGGATGTAGTTTGGTTATTGT 394 239 59 Antisense
TTTTCTCGATTTCATAATTCACCTT 199 677 99 Antisense
TAATTCACCTTTTTAGAGTGCTGGT 66 633 113 Antisense
AGAGTGCTGGTGATGCTGGTTCAAC 577 67 127 Antisense
GCTGGTTCAACGGTACGCGATGACA 478 293 141 Antisense
GACAGTATCGGATTTACAGGCCAAA 499 363 162 Antisense
ACAGGCCAAATTCCAGACTTCTATA 417 107 177 Antisense
GACTTCTATAGCTCGGAATACGTCA 702 371 192 Antisense
GCTAGTTGTGGCTTACTATCAGTAG 565 303 223 Antisense
Sequence Source Affymetrix Proprietary Database