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[181560_at]

Description H12I19.4 /REP_DB=WormBase Gene ID /WP=CE16176 /TR=O45617 /GB=CAB11538.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 31
(-2.1)
A 		24
(-3)
A 		37.4
(-1.3)
A 		72.2
(3)
A 		48
B 36.7
(3)
A 		29.1
(0.8)
A 		15.7
(-3)
A 		34.9
(2.5)
A 		21
C 36.6
(-1.6)
A 		44.6
(0.1)
M 		29.4
(-3)
A 		59.3
(3)
A 		30
avr 34.8
(-1.4) 		32.6
(-1.9) 		27.5
(-3) 		55.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.8
(-2.6)
A 		16.4
(-0.7)
A 		38.3
(2.7)
A 		16.9
(-0.6)
A 		40
(3)
A 		1.4
(-3)
A 		39
B 25.1
(1.7)
A 		30.7
(3)
A 		14.3
(-0.8)
A 		5.6
(-2.9)
A 		23.4
(1.3)
A 		5.1
(-3)
A 		26
C 37.5
(2.7)
A 		30
(1.4)
A 		34.6
(2.2)
A 		39.5
(3)
A 		20.6
(-0.1)
A 		3.4
(-3)
A 		36
avr 22.1
(1.4) 		25.7
(2.2) 		29.1
(3) 		20.7
(1) 		28
(2.7) 		3.3
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 11.3
(3)
A 		5.2
(-3)
A 		9.8
(1.5)
A 		10.6
(2.3)
A 		6
B 11.7
(3)
A 		7.2
(-0.3)
A 		3.6
(-3)
A 		7.4
(-0.2)
A 		8
C 12.1
(1.5)
A 		12.8
(3)
M 		10.3
(-2.4)
A 		10
(-3)
A 		3
avr 11.7
(3) 		8.4
(-2.2) 		7.9
(-3) 		9.3
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		5.8
(-0.2)
A 		8.3
(1.1)
A 		4.3
(-1)
A 		12.1
(3)
A 		0.3
(-3)
A 		12
B 8.7
(2)
A 		10.2
(3)
A 		3.5
(-1.6)
A 		1.5
(-3)
A 		9.5
(2.5)
A 		1.9
(-2.7)
A 		9
C 13.9
(3)
A 		9.2
(0.8)
A 		8.8
(0.6)
A 		7.9
(0.2)
A 		6.7
(-0.4)
A 		1.1
(-3)
A 		13
avr 7.8
(1.8) 		8.4
(2.3) 		6.9
(1.2) 		4.6
(-0.5) 		9.4
(3) 		1.1
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9088
Sequence Type Exemplar sequence
Representative Public ID H12I19.4 NCBI
Target Description H12I19.4 /REP_DB=WormBase Gene ID /WP=CE16176 /TR=O45617 /GB=CAB11538.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070309 NCBI Caenorhabditis elegans H12I19.4 (H12I19.4) mRNA, complete cds. 11/11 None
SNAP00000013877 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14145955:14148838:1 10/11 None
GENEFINDER00000013880 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14145955:14148838:1 11/11 None
H12I19.4 ENSEMBL cdna:known chromosome:CEL140:IV:14145955:14148838:1 gene:H12I19.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14145960-14148844(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H12I19.4
Entrez Gene 186738 Entrez gene
SwissProt O45617 EMBL-EBI
WormBase CE36179 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11538 Hypothetical protein H12I19.4 [Caenorhabditis elegans] ref|NP_502710.2| H12I19.4 [Caenorhabditis elegans] 0.0
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 0.0
blast CAB07360 Hypothetical protein F11A5.8 [Caenorhabditis elegans] ref|NP_507088.1| F11A5.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502710.2 9 7-26,30-49,70-92,135-157,164-186,259-276,288-310,314-336,348-365
H12I19.4 9 7-26,30-49,70-92,135-157,164-186,259-276,288-310,314-336,348-365
SNAP00000013877 9 7-26,30-49,70-92,134-156,163-182,192-209,240-262,306-328,341-360
GENEFINDER00000013880 9 7-26,30-49,70-92,135-157,164-186,259-276,288-310,314-336,348-365
Sequence
Target Sequence 
>C. ELEGANS:181560_AT
gaaacctctctgtaatggcgcttggtaacagttatgtgctcaatttcaatgaccatatta
gatcccaattcaattacaactattcagaatggagatctttgttcgtcagagatagtttcg
gatttttttatgatggcgaggctgccgcgttacgcggatctcacagtaaatcatcactgg
ttacaatgagaaacctagtacaactacacaagccagatatactgtttctcatttctagat
atgttcagaaaatctatatcctcgcaccacatcccctgtatcctttgaatttcatgaatt
cattcctgcagtatgttaccagaaaaccgagagaactagaaactctccatctaaagaaag
atgaggtggatgaagaatggatgtatgcaagggaacggttcagtctgattaaatgtaaaa
agtgcaaggtgttcgatctcggtgaggtttttcttgataatgaaaagtatttgacatttg
atcggcaaaccaaactttcctacgtggataacggcattcatttgactggtccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCTCTCTGTAATGGCGCTTGG 271 359 1298 Antisense
GAATGGAGATCTTTGTTCGTCAGAG 347 333 1384 Antisense
TTATGATGGCGAGGCTGCCGCGTTA 537 679 1425 Antisense
GCTGCCGCGTTACGCGGATCTCACA 499 297 1438 Antisense
AGCCAGATATACTGTTTCTCATTTC 700 83 1508 Antisense
TCAGAAAATCTATATCCTCGCACCA 640 623 1542 Antisense
GAATTCATTCCTGCAGTATGTTACC 352 325 1593 Antisense
AAGTGCAAGGTGTTCGATCTCGGTG 547 157 1717 Antisense
GATCTCGGTGAGGTTTTTCTTGATA 664 417 1732 Antisense
TGATCGGCAAACCAAACTTTCCTAC 552 565 1776 Antisense
ACGGCATTCATTTGACTGGTCCAGC 233 97 1808 Antisense
Sequence Source Affymetrix Proprietary Database