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[181558_at]

Description C30B5.5 /REP_DB=WormBase Gene ID /WP=CE02524 /TR=Q18321 /GB=AAK31469.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 142.3
(-0.4)
P 		130.3
(-1.2)
P 		104.3
(-3)
P 		190.5
(3)
M 		86
B 83.9
(-2.6)
P 		126.2
(2.8)
P 		80.8
(-3)
A 		128.1
(3)
A 		47
C 91.9
(-3)
P 		118.5
(0.3)
P 		108
(-1)
P 		140.3
(3)
P 		48
avr 106
(-2.1) 		125
(-0) 		97.7
(-3) 		153
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 171.3
(2.8)
P 		97.9
(-2.3)
P 		88
(-3)
P 		90.3
(-2.8)
P 		174.2
(3)
P 		97.3
(-2.4)
P 		86
B 101.8
(-0.6)
P 		132.8
(2)
P 		74
(-3)
P 		144.9
(3)
P 		94.6
(-1.3)
P 		96.6
(-1.1)
P 		71
C 110.3
(-2.1)
P 		153
(3)
P 		107.9
(-2.4)
P 		131.4
(0.4)
P 		102.7
(-3)
P 		134.9
(0.8)
P 		50
avr 127.8
(3) 		127.9
(3) 		90
(-3) 		122.2
(2.1) 		123.8
(2.4) 		109.6
(0.1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 51.8
(3)
P 		28.3
(-2.8)
P 		27.3
(-3)
P 		27.9
(-2.9)
M 		25
B 26.8
(0.9)
P 		31.2
(3)
P 		18.7
(-3)
A 		27.3
(1.1)
A 		13
C 30.4
(-0.1)
P 		34.1
(1.5)
P 		37.6
(3)
P 		23.7
(-3)
P 		14
avr 36.3
(3) 		31.2
(-0.1) 		27.9
(-2) 		26.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 31.6
(-0.8)
P 		34.8
(-0.2)
P 		19.2
(-3)
P 		22.9
(-2.3)
P 		52.6
(3)
P 		23.7
(-2.2)
P 		33
B 35.4
(1)
P 		44.2
(3)
P 		18
(-3)
P 		38.4
(1.7)
P 		38.4
(1.7)
P 		36
(1.1)
P 		26
C 40.9
(1.3)
P 		46.7
(3)
P 		27.5
(-2.7)
P 		26.4
(-3)
P 		33.2
(-1)
P 		45.2
(2.6)
P 		20
avr 36
(1.3) 		41.9
(3) 		21.6
(-3) 		29.2
(-0.8) 		41.4
(2.9) 		35
(1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5711
Sequence Type Exemplar sequence
Representative Public ID C30B5.5 NCBI
Target Description C30B5.5 /REP_DB=WormBase Gene ID /WP=CE02524 /TR=Q18321 /GB=AAK31469.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062840 NCBI Caenorhabditis elegans C30B5.5 (C30B5.5) mRNA, complete cds. 11/11 None
SNAP00000017618 ENSEMBL cdna:SNAP chromosome:CEL140:II:6201566:6202887:-1 11/11 None
GENEFINDER00000017625 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6201566:6208137:-1 11/11 None
C30B5.5 ENSEMBL cdna:known chromosome:CEL140:II:6201566:6208137:-1 gene:C30B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6201562-6208134(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30B5.5
Entrez Gene 183041 Entrez gene
SwissProt Q18321 EMBL-EBI
WormBase CE02524 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31469 Hypothetical protein C30B5.5 [Caenorhabditis elegans] ref|NP_495241.1| C30B5.5 [Caenorhabditis elegans] 0.0
blast CAE59265 Hypothetical protein CBG02594 [Caenorhabditis briggsae] 0.0
blast AAK31469 Hypothetical protein C30B5.5 [Caenorhabditis elegans] ref|NP_495241.1| C30B5.5 [Caenorhabditis elegans] 1.0E-144
blast CAE59264 Hypothetical protein CBG02592 [Caenorhabditis briggsae] 4.0E-86
blast CAE59264 Hypothetical protein CBG02592 [Caenorhabditis briggsae] 2.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495241.1 7 35-57,69-91,106-128,186-208,304-326,349-368,729-751
C30B5.5 7 35-57,69-91,106-128,186-208,304-326,349-368,729-751
SNAP00000017618 1 200-222
GENEFINDER00000017625 7 35-57,69-91,118-140,160-182,226-248,348-370,773-795
Sequence
Target Sequence 
>C. ELEGANS:181558_AT
taacccaatgtactctgtttccacgccatctgcaattgaaactggcattccttccggtat
ccatggtccatggtgcttcatagacaaggttggaactaatggtacagaaagtttcaagta
cactcccgtcacttgcttcaattattgcgatgagacaaaagtggcaacggacaatgaaaa
aatgagattgacagaaaatggatatgcaatactgaaacaaaactataatccggcactctt
agatccaatcgagaaacttttcacggagtatcagtttggaaacatgaagtattatacatt
taaaaagtctcgtgagcagcctcctcaatatttagaacttcgtcagaaagttttcatagc
cttatgcctcgtcttttgtgtagtcatcgcctggatactttcgtgctacttcctcaagaa
acattcccaaaaactccatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCCAATGTACTCTGTTTCCACG 49 639 1848 Antisense
GTTTCCACGCCATCTGCAATTGAAA 533 451 1864 Antisense
AATTGAAACTGGCATTCCTTCCGGT 247 175 1881 Antisense
GAAAGTTTCAAGTACACTCCCGTCA 437 359 1954 Antisense
TCCCGTCACTTGCTTCAATTATTGC 124 597 1971 Antisense
TAATCCGGCACTCTTAGATCCAATC 231 635 2073 Antisense
AGCAGCCTCCTCAATATTTAGAACT 498 77 2162 Antisense
CTTATGCCTCGTCTTTTGTGTAGTC 24 223 2208 Antisense
GTGTAGTCATCGCCTGGATACTTTC 411 481 2225 Antisense
CTTTCGTGCTACTTCCTCAAGAAAC 169 221 2245 Antisense
GAAACATTCCCAAAAACTCCATCAA 399 355 2265 Antisense
Sequence Source Affymetrix Proprietary Database