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[181557_at]

Description F56C9.8 /REP_DB=WormBase Gene ID /WP=CE01327 /TR=Q20866 /GB=AAK18963.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 74      6grp_total > 19      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 765.6
(3)
P 		619
(0.4)
P 		424.7
(-3)
P 		677.9
(1.5)
P 		341
B 1029.8
(3)
P 		685
(-1.3)
P 		584.1
(-2.6)
P 		552.9
(-3)
P 		477
C 846.1
(3)
P 		739.3
(1.2)
P 		624.6
(-0.8)
P 		499.4
(-3)
P 		347
avr 880.5
(3) 		681.1
(-0.6) 		544.5
(-3) 		576.7
(-2.4) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 1047.7
(3)
P 		808.1
(-0.2)
P 		629.4
(-2.5)
P 		732.6
(-1.2)
P 		881.4
(0.8)
P 		592.4
(-3)
P 		455
B 750.9
(1.1)
P 		673.8
(-0.5)
P 		550.4
(-3)
P 		847.3
(3)
P 		793.7
(1.9)
P 		582.3
(-2.4)
P 		297
C 804
(2.4)
P 		780.9
(1.9)
P 		537.7
(-3)
P 		835.9
(3)
P 		582.3
(-2.1)
P 		559.5
(-2.6)
P 		298
avr 867.5
(3) 		754.3
(0.7) 		572.5
(-3) 		805.3
(1.7) 		752.5
(0.7) 		578.1
(-2.9) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 278.7
(3)
P 		134.4
(-1.8)
P 		111
(-2.6)
P 		99.2
(-3)
P 		180
B 328.4
(3)
P 		169.2
(-1.5)
P 		135.3
(-2.5)
P 		117.8
(-3)
P 		211
C 280.1
(3)
P 		212.5
(0.9)
P 		217.7
(1.1)
P 		84.2
(-3)
P 		196
avr 295.7
(3) 		172
(-0.8) 		154.7
(-1.3) 		100.4
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 193.1
(-0.8)
P 		287.4
(3)
P 		137.1
(-3)
P 		185.8
(-1.1)
P 		266
(2.1)
P 		144.2
(-2.7)
P 		150
B 261.3
(1.1)
P 		224.3
(-0.1)
P 		133.7
(-3)
P 		224.4
(-0.1)
P 		322.5
(3)
P 		217.1
(-0.3)
P 		189
C 298
(3)
P 		238.3
(0.8)
P 		136.8
(-3)
P 		168.1
(-1.8)
P 		188.4
(-1.1)
P 		187.3
(-1.1)
P 		161
avr 250.8
(2.6) 		250
(2.6) 		135.9
(-3) 		192.8
(-0.2) 		259
(3) 		182.9
(-0.7) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7447
Sequence Type Exemplar sequence
Representative Public ID F56C9.8 NCBI
Target Description F56C9.8 /REP_DB=WormBase Gene ID /WP=CE01327 /TR=Q20866 /GB=AAK18963.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066212 NCBI Caenorhabditis elegans F56C9.8 (F56C9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000032867 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7316401:7318683:-1 11/11 None
F56C9.8 ENSEMBL cdna:known chromosome:CEL140:III:7316401:7318683:-1 gene:F56C9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032853 7/11 Cross Hyb Matching Probes None
SNAP00000032854 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7316398-7318681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C9.8
Entrez Gene 186373 Entrez gene
SwissProt Q20866 EMBL-EBI
WormBase CE01327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18963 Hypothetical protein F56C9.8 [Caenorhabditis elegans] ref|NP_498613.1| F56C9.8 [Caenorhabditis elegans] 4.0E-76
blast CAE57621 Hypothetical protein CBG00604 [Caenorhabditis briggsae] 8.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498613.1 1 20-42
F56C9.8 1 20-42
GENEFINDER00000032867 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:181557_AT
gttatgttcctgcgtacacttttgatgaaccatttgctggaaatggaccacagatcgctg
tggtctttgcaattgtcattggaggtgttctgcttctcgccgctttcatttatgtaatct
acgctgccgtagtgagatcaatgagaagtgatgataaacaaaggcttcattctgggagga
attctgcgcaatggaatcaaccacaacaacaatacagagagcaacagccagcttctgact
tcccttataatccagctccaacacagaactatgactacaatgctccaatccgtacaccag
tgaatccaacgtcattcactccagttccatccgtaactcaatacagtactcaaccacaac
aatattcaaatgttccattggtgactccaactactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGTTCCTGCGTACACTTTTGA 447 447 17 Antisense
GATCGCTGTGGTCTTTGCAATTGTC 372 417 69 Antisense
TCATTGGAGGTGTTCTGCTTCTCGC 414 619 92 Antisense
TTCTCGCCGCTTTCATTTATGTAAT 61 693 110 Antisense
AGAGCAACAGCCAGCTTCTGACTTC 573 69 234 Antisense
CTGACTTCCCTTATAATCCAGCTCC 685 237 251 Antisense
ATCCAGCTCCAACACAGAACTATGA 362 39 266 Antisense
TGACTACAATGCTCCAATCCGTACA 500 565 288 Antisense
TGAATCCAACGTCATTCACTCCAGT 193 575 317 Antisense
TCCAGTTCCATCCGTAACTCAATAC 686 589 336 Antisense
GTTCCATTGGTGACTCCAACTACTC 481 441 388 Antisense
Sequence Source Affymetrix Proprietary Database