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[181556_at]

Description W03G1.8 /REP_DB=WormBase Gene ID /WP=CE17286 /TR=Q9UAY6 /GB=AAD14756.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 24.5
(-1.4)
A 		13
(-3)
A 		55.6
(3)
P 		21.1
(-1.9)
A 		43
B 33.4
(3)
A 		16.9
(-2.9)
A 		28.6
(1.3)
A 		16.6
(-3)
A 		17
C 13.5
(-1.5)
A 		24.3
(0.2)
A 		3.7
(-3)
A 		42.9
(3)
A 		39
avr 23.8
(0.1) 		18.1
(-3) 		29.3
(3) 		26.9
(1.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.1
(-2.8)
A 		40.8
(3)
P 		11
(-1.6)
A 		4.2
(-2.6)
A 		1.8
(-3)
A 		8.1
(-2)
A 		39
B 5.4
(-0.8)
A 		4
(-2.1)
A 		7.1
(0.8)
A 		9.4
(3)
A 		3.1
(-3)
A 		6.4
(0.1)
A 		6
C 4.3
(-2.6)
A 		13.4
(-1)
A 		2.3
(-2.9)
A 		36.8
(3)
A 		22
(0.5)
A 		1.7
(-3)
A 		35
avr 4.3
(-3) 		19.4
(3) 		6.8
(-2) 		16.8
(2) 		9
(-1.1) 		5.4
(-2.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.9
(0.1)
A 		2.8
(-3)
A 		14.5
(3)
P 		3.1
(-2.8)
A 		12
B 10.7
(3)
A 		4.2
(-2.4)
A 		6.6
(-0.4)
A 		3.5
(-3)
A 		7
C 4.5
(0.3)
A 		7
(2.8)
A 		1.3
(-3)
A 		7.2
(3)
A 		6
avr 8
(3) 		4.7
(-2.8) 		7.5
(2.1) 		4.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-3)
A 		14.5
(3)
P 		2.4
(-2.2)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		2
(-2.4)
A 		14
B 1.9
(0.2)
A 		1.3
(-2.5)
A 		1.7
(-0.7)
A 		2.5
(3)
A 		1.2
(-3)
A 		2.4
(2.5)
A 		1
C 1.6
(-2.1)
A 		4.1
(0.1)
A 		0.6
(-3)
A 		7.4
(3)
A 		7.1
(2.7)
A 		0.6
(-3)
A 		7
avr 1.4
(-3) 		6.6
(3) 		1.6
(-2.8) 		3.7
(-0.3) 		2.9
(-1.3) 		1.7
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10837
Sequence Type Exemplar sequence
Representative Public ID W03G1.8 NCBI
Target Description W03G1.8 /REP_DB=WormBase Gene ID /WP=CE17286 /TR=Q9UAY6 /GB=AAD14756.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067541 NCBI Caenorhabditis elegans W03G1.8 (W03G1.8) mRNA, complete cds. 11/11 None
W03G1.8 ENSEMBL cdna:known chromosome:CEL140:IV:527379:528583:-1 gene:W03G1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041681 3/11 Cross Hyb Matching Probes None
SNAP00000041683 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:527378-528583(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03G1.8
Entrez Gene 189168 Entrez gene
SwissProt Q9UAY6 EMBL-EBI
WormBase CE17286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14756 Hypothetical protein W03G1.8 [Caenorhabditis elegans] ref|NP_499942.1| W03G1.8 [Caenorhabditis elegans] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:181556_AT
cagcgtacagtttgacattctcctccaatttctttgagaactttgaagattacacgttcc
ataaaattgctcaaacgtttcgagtcgaggatccagatcgaatttgcattatccttatcg
atggcttctcagaattccaagatagcttatgtgaggaaccaggttttcctcatctttctt
ttgctcctgaattgaagaaggatattgaatcactaaggaaaatttggaatctaccggaaa
gcgttgccacccaaaaatgcttcacaagctcggctcttgtttttacatataacaaggaaa
ctatggatgagcgaattgtgggattggtgaaattattgaaagatgtattcaaatccgaaa
atgtgattgtggaaatagacaaagaaaaactattgatgatgataaattcaatgatggtgg
cgagagaattagtgaatgaagtcggccatatgatcactgaagatgaggtcggcagattgg
gaactgtgaggaaatgggccccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGTACAGTTTGACATTCTCCTC 284 203 83 Antisense
ATTGCTCAAACGTTTCGAGTCGAGG 412 3 148 Antisense
GCATTATCCTTATCGATGGCTTCTC 3 309 188 Antisense
GAGGAACCAGGTTTTCCTCATCTTT 324 405 235 Antisense
TCATCTTTCTTTTGCTCCTGAATTG 259 621 252 Antisense
GAATCTACCGGAAAGCGTTGCCACC 480 327 309 Antisense
TGCCACCCAAAAATGCTTCACAAGC 421 583 327 Antisense
AAGCTCGGCTCTTGTTTTTACATAT 202 151 348 Antisense
GAAGTCGGCCATATGATCACTGAAG 130 337 520 Antisense
AGATGAGGTCGGCAGATTGGGAACT 661 59 543 Antisense
GGAACTGTGAGGAAATGGGCCCCCA 13 529 562 Antisense
Sequence Source Affymetrix Proprietary Database