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[181555_at]

Description B0496.7 /REP_DB=WormBase Gene ID /WP=CE06719 /TR=Q17522 /GB=AAK18878.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 09      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 83      6grp_total > 29      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 177.6
(-0.1)
P 		267.8
(3)
P 		173.1
(-0.3)
P 		93.3
(-3)
P 		175
B 195.8
(1.3)
P 		245.4
(3)
P 		146
(-0.4)
P 		71.5
(-3)
P 		174
C 180
(2.1)
P 		188.6
(3)
P 		163.8
(0.4)
P 		132
(-3)
P 		57
avr 184.5
(0.8) 		233.9
(3) 		161
(-0.2) 		98.9
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 587.5
(2.1)
P 		339.8
(-1.7)
P 		256.6
(-3)
P 		548.6
(1.5)
P 		643.9
(3)
P 		446.6
(-0.1)
P 		387
B 492.1
(1.7)
P 		436.1
(0.5)
P 		277
(-3)
P 		469.5
(1.2)
P 		552.7
(3)
P 		426.5
(0.3)
P 		276
C 775.8
(3)
P 		428.7
(-1.5)
P 		313
(-3)
P 		464.3
(-1)
P 		542.8
(-0)
P 		492.3
(-0.7)
P 		463
avr 618.5
(3) 		401.5
(-0.9) 		282.2
(-3) 		494.1
(0.8) 		579.8
(2.3) 		455.1
(0.1) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 64.7
(3)
P 		58.1
(2.2)
P 		45.3
(0.7)
P 		13.7
(-3)
P 		51
B 62.4
(3)
P 		60.6
(2.8)
P 		33.8
(-0.6)
P 		15.2
(-3)
P 		47
C 59.6
(3)
P 		54.2
(2.1)
P 		57.1
(2.6)
P 		22.3
(-3)
P 		37
avr 62.2
(3) 		57.6
(2.4) 		45.4
(0.8) 		17.1
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 108.3
(-0.7)
P 		120.8
(-0.2)
P 		55.9
(-3)
P 		139.1
(0.6)
P 		194.3
(3)
P 		108.7
(-0.7)
P 		138
B 171.2
(1)
P 		145.1
(-0)
P 		67.3
(-3)
P 		124.4
(-0.8)
P 		224.5
(3)
P 		159
(0.5)
P 		157
C 287.6
(3)
P 		130.8
(-1.5)
P 		79.7
(-3)
P 		93.4
(-2.6)
P 		175.6
(-0.2)
P 		164.8
(-0.5)
P 		208
avr 189
(2.6) 		132.2
(-0) 		67.6
(-3) 		119
(-0.6) 		198.1
(3) 		144.2
(0.5) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9204
Sequence Type Exemplar sequence
Representative Public ID B0496.7 NCBI
Target Description B0496.7 /REP_DB=WormBase Gene ID /WP=CE06719 /TR=Q17522 /GB=AAK18878.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068786 NCBI Caenorhabditis elegans B0496.7 (B0496.7) mRNA, complete cds. 11/11 None
SNAP00000020645 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7444746:7445291:-1 11/11 None
GENEFINDER00000020656 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7444746:7445291:-1 11/11 None
B0496.7 ENSEMBL cdna:known chromosome:CEL140:IV:7444746:7445291:-1 gene:B0496.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7444751-7445297(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.7
Entrez Gene 182010 Entrez gene
SwissProt Q17522 EMBL-EBI
WormBase CE06719 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603528_S_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
CANINE:1587841_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
CANINE_2:CFA.6239.1.A1_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
CANINE_2:CFA.6267.2.S1_X_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
CANINE_2:CFA.6267.3.S1_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
CANINE_2:CFA.6267.3.S1_S_AT similar to Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP) cfa
HG-U133_PLUS_2:205081_AT cysteine-rich protein 1 (intestinal) hs
HG-FOCUS:205081_AT cysteine-rich protein 1 (intestinal) hs
HG-U133A:205081_AT cysteine-rich protein 1 (intestinal) hs
HG-U133A_2:205081_AT cysteine-rich protein 1 (intestinal) hs
HU35KSUBB:RC_N92934_S_AT cysteine-rich protein 1 (intestinal) hs
HUGENEFL:U09770_AT cysteine-rich protein 1 (intestinal) hs
U133_X3P:G4503046_3P_AT cysteine-rich protein 1 (intestinal) hs
HG-U95AV2:33232_AT cysteine-rich protein 1 (intestinal) hs
MU11KSUBA:AA518990_AT cysteine-rich protein 1 (intestinal) mm
MU11KSUBA:M13018_F_AT cysteine-rich protein 1 (intestinal) mm
MU11KSUBB:MSA.554.0_F_AT cysteine-rich protein 1 (intestinal) mm
MG-U74AV2:94061_AT cysteine-rich protein 1 (intestinal) mm
MOE430A:1416326_AT cysteine-rich protein 1 (intestinal) mm
MOUSE430A_2:1416326_AT cysteine-rich protein 1 (intestinal) mm
MOUSE430_2:1416326_AT cysteine-rich protein 1 (intestinal) mm
MG-U74BV2:165168_I_AT Cysteine-rich protein 1 (intestinal), mRNA (cDNA clone MGC:18577 IMAGE:4206322) mm
MU19KSUBC:TC36715_F_AT Cysteine-rich protein 1 (intestinal), mRNA (cDNA clone MGC:18577 IMAGE:4206322) mm
MU19KSUBC:TC36715_R_AT Cysteine-rich protein 1 (intestinal), mRNA (cDNA clone MGC:18577 IMAGE:4206322) mm
Protein Similarities
Method ID Description E-Value
blast AAK18878 Hypothetical protein B0496.7 [Caenorhabditis elegans] ref|NP_501187.1| B0496.7 [Caenorhabditis elegans] 7.0E-49
blast CAE61880 Hypothetical protein CBG05866 [Caenorhabditis briggsae] 1.0E-46
blast AAL27241 Hypothetical protein F20D12.5 [Caenorhabditis elegans] ref|NP_501326.2| Temporarily Assigned Gene name family member (tag-291) [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:181555_AT
atgccaaactgtccaaattgccaaaaacctgtatacttcgctgaacgagtttcctctcta
ggaaaagattggcacagaccatgcttgaaatgtgcaaataaagcatgcgggaaaacatta
agtgctggaagtcattcagagcacgagggtaaaccttattgcaatcgttgttatggcgct
cttttcggaccaaaaggatacggtcacggaggaactgaatcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAACTGTCCAAATTGCCAAA 388 41 13 Antisense
ATTGCCAAAAACCTGTATACTTCGC 387 7 29 Antisense
AAAACCTGTATACTTCGCTGAACGA 23 131 36 Antisense
CGCTGAACGAGTTTCCTCTCTAGGA 1 255 51 Antisense
AAGATTGGCACAGACCATGCTTGAA 92 157 77 Antisense
AACATTAAGTGCTGGAAGTCATTCA 299 137 126 Antisense
GGAAGTCATTCAGAGCACGAGGGTA 173 531 139 Antisense
GGGTAAACCTTATTGCAATCGTTGT 321 497 159 Antisense
TGGCGCTCTTTTCGGACCAAAAGGA 411 545 186 Antisense
AAAGGATACGGTCACGGAGGAACTG 156 115 205 Antisense
CGGTCACGGAGGAACTGAATCACAC 111 245 213 Antisense
Sequence Source Affymetrix Proprietary Database