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[181552_at]

Description T22B7.2 /REP_DB=WormBase Gene ID /WP=CE13942 /TR=Q23043 /GB=AAB04595.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 35      6grp_total > 71      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1352
1 2 3 4 range
A 617
(-1.2)
P 		1030.2
(3)
P 		919.3
(1.9)
P 		441.1
(-3)
P 		589
B 596.5
(-1.3)
P 		1235.2
(3)
P 		1052.5
(1.8)
P 		350.4
(-3)
P 		885
C 607
(-2.5)
P 		1398.7
(1.5)
P 		1702.1
(3)
P 		497.5
(-3)
P 		1205
avr 606.8
(-1.7) 		1221.4
(3) 		1224.6
(3) 		429.7
(-3) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4224
1 2 3 4 5 6 range
A 1765.5
(-2)
P 		3068.1
(0.1)
P 		4611.4
(2.5)
P 		4925.4
(3)
P 		3260.3
(0.4)
P 		1121.2
(-3)
P 		3804
B 1827.1
(-2.8)
P 		2906.5
(-1)
P 		3466.1
(-0)
P 		5279.6
(3)
P 		3903.8
(0.7)
P 		1702.6
(-3)
P 		3577
C 1619.1
(-3)
P 		2413.9
(-1.7)
P 		3704.9
(0.4)
P 		5345
(3)
P 		3721.2
(0.4)
P 		1830.6
(-2.7)
P 		3726
avr 1737.2
(-2.7) 		2796.2
(-0.9) 		3927.5
(0.9) 		5183.3
(3) 		3628.4
(0.4) 		1551.5
(-3) 		3632
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 224.6
(2.5)
P 		223.6
(2.4)
P 		240.3
(3)
P 		64.6
(-3)
P 		176
B 190.2
(0)
P 		305.1
(3)
P 		243.9
(1.4)
P 		74.7
(-3)
P 		230
C 200.9
(-1.6)
P 		402.1
(0.7)
P 		593.2
(3)
P 		83.9
(-3)
P 		509
avr 205.2
(-0.2) 		310.3
(2) 		359.1
(3) 		74.4
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1313
1 2 3 4 5 6 range
A 325.5
(-2.7)
P 		1091.2
(2)
P 		1004.3
(1.5)
P 		1249.2
(3)
P 		983.8
(1.4)
P 		273
(-3)
P 		976
B 635.8
(-3)
P 		967.5
(-0.9)
P 		841.7
(-1.7)
P 		1398.4
(1.8)
P 		1586.1
(3)
P 		634.9
(-3)
P 		951
C 600.1
(-3)
P 		736.6
(-1.6)
P 		943
(0.4)
P 		1074.9
(1.7)
P 		1204.1
(3)
P 		612.8
(-2.9)
P 		604
avr 520.5
(-2.9) 		931.8
(0.4) 		929.7
(0.4) 		1240.8
(2.9) 		1258
(3) 		506.9
(-3) 		751
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17105
Sequence Type Exemplar sequence
Representative Public ID T22B7.2 NCBI
Target Description T22B7.2 /REP_DB=WormBase Gene ID /WP=CE13942 /TR=Q23043 /GB=AAB04595.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076551(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076551 NCBI Caenorhabditis elegans T22B7.3 (T22B7.3) mRNA, complete cds. 9/11 A 
GENEFINDER00000005793 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5647339:5650068:1 9/11 None
SNAP00000005786 ENSEMBL cdna:SNAP chromosome:CEL140:X:5649408:5650068:1 9/11 None
T22B7.3 ENSEMBL cdna:known chromosome:CEL140:X:5647339:5650150:1 gene:T22B7.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5649407-5650068(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B7.3
Entrez Gene 188723 Entrez gene
SwissProt Q23042 EMBL-EBI
WormBase CE31242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04595 Hypothetical protein T22B7.3 [Caenorhabditis elegans] ref|NP_508952.2| T22B7.3 [Caenorhabditis elegans] emb|CAE68776.1| Hypothetical protein CBG14718 [Caenorhabditis briggsae] 1.0E-157
blast AAB04595 Hypothetical protein T22B7.3 [Caenorhabditis elegans] ref|NP_508952.2| T22B7.3 [Caenorhabditis elegans] emb|CAE68776.1| Hypothetical protein CBG14718 [Caenorhabditis briggsae] 3.0E-76
blast CAB01173 Hypothetical protein F38H4.5 [Caenorhabditis elegans] ref|NP_502245.1| F38H4.5 [Caenorhabditis elegans] 3.0E-75
blast CAE62133 Hypothetical protein CBG06177 [Caenorhabditis briggsae] 7.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003198 EMBL-EBI Amidinotransferase 3.7E-63
Pfam IPR003198 EMBL-EBI Amidinotransferase 2.5E-29
Sequence
Target Sequence 
>C. ELEGANS:181552_AT
gaacccgaaccgacgtaagagcacttcgcgatgttgcaaataaactcgatgatggaacaa
actggaaagtgattggatgtcgactcgtcgatccaaggttctaccacatagacacggcat
tctgcccactcaacgaagacgttgcaatctactacccgtatgcattcgatcatatcaccc
gtcataatatgagaaacgagacagatttgattgaggtttctcaaaaggaagcacgcaatt
ttgcatgtaatgctgtggtggttgggcaaaacgtcataatgcatcagggcaacgaagaaa
ttgccaataagcttgttaaactgggcttcactgttaggttcgactacaaatcttgccgtt
ggctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCCGAACCGACGTAAGAGCACT 563 345 23 Antisense
GTAAGAGCACTTCGCGATGTTGCAA 686 461 37 Antisense
AAGTGATTGGATGTCGACTCGTCGA 365 159 89 Antisense
TCGTCGATCCAAGGTTCTACCACAT 694 603 107 Antisense
TACCACATAGACACGGCATTCTGCC 539 649 124 Antisense
TTCTGCCCACTCAACGAAGACGTTG 48 693 142 Antisense
GAAGACGTTGCAATCTACTACCCGT 282 339 157 Antisense
CTACTACCCGTATGCATTCGATCAT 170 227 171 Antisense
TTCGATCATATCACCCGTCATAATA 291 695 187 Antisense
TGGGCTTCACTGTTAGGTTCGACTA 9 555 344 Antisense
GACTACAAATCTTGCCGTTGGCTTA 112 373 364 Antisense
Sequence Source Affymetrix Proprietary Database