[Home] | [Total List]

[181551_at]

Description ZK973.4 /REP_DB=WormBase Gene ID /WP=CE24750 /TR=Q9N4M2 /GB=AAF40008.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_high_8_8 > 20      6grp_total > 94      4grp_total > 18      6grp_high1_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 33
(-3)
A 		111
(0.7)
P 		56.8
(-1.9)
A 		159.6
(3)
P 		127
B 52.2
(-3)
M 		66.2
(-1.5)
A 		73
(-0.8)
A 		109.9
(3)
P 		58
C 67
(-2.3)
P 		75.9
(-2.1)
M 		38.5
(-3)
P 		290
(3)
P 		252
avr 50.7
(-3) 		84.4
(-1.5) 		56.1
(-2.8) 		186.5
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 48
(-2.2)
P 		34.7
(-3)
A 		89.5
(0.1)
P 		45.9
(-2.4)
A 		139.7
(3)
P 		117.5
(1.7)
P 		105
B 73.9
(0.4)
A 		37.9
(-3)
P 		70.7
(0.1)
A 		60.7
(-0.8)
P 		101.5
(3)
P 		80.8
(1)
P 		64
C 36.5
(-3)
A 		98.3
(1.5)
P 		62.4
(-1.1)
A 		118.7
(3)
P 		86.8
(0.7)
P 		78.2
(0)
P 		82
avr 52.8
(-3) 		57
(-2.6) 		74.2
(-0.7) 		75.1
(-0.6) 		109.3
(3) 		92.2
(1.2) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 12
(-3)
A 		24.1
(3)
P 		14.8
(-1.6)
A 		23.4
(2.7)
P 		12
B 16.6
(-2.7)
M 		16.3
(-3)
A 		16.9
(-2.5)
A 		23.4
(3)
P 		7
C 22.2
(-1.5)
P 		21.8
(-1.6)
M 		13.4
(-3)
P 		48.9
(3)
P 		36
avr 16.9
(-2.3) 		20.7
(-1) 		15
(-3) 		31.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 8.8
(-3)
P 		12.4
(-2.4)
A 		19.5
(-1.1)
P 		11.6
(-2.5)
A 		42.2
(3)
P 		28.6
(0.6)
P 		33
B 25.7
(-0.3)
A 		12.6
(-3)
P 		17.2
(-2)
A 		16.1
(-2.3)
P 		41.2
(3)
P 		30.1
(0.7)
P 		29
C 13.5
(-3)
A 		30
(3)
P 		15.9
(-2.1)
A 		23.9
(0.8)
P 		28.1
(2.3)
P 		26.2
(1.6)
P 		17
avr 16
(-3) 		18.3
(-2.3) 		17.5
(-2.6) 		17.2
(-2.7) 		37.2
(3) 		28.3
(0.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2145
Sequence Type Exemplar sequence
Representative Public ID ZK973.4 NCBI
Target Description ZK973.4 /REP_DB=WormBase Gene ID /WP=CE24750 /TR=Q9N4M2 /GB=AAF40008.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058954 NCBI Caenorhabditis elegans ZK973.4 (ZK973.4) mRNA, complete cds. 11/11 None
SNAP00000023508 ENSEMBL cdna:SNAP chromosome:CEL140:I:4359114:4364037:1 11/11 None
GENEFINDER00000023519 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4363416:4364037:1 11/11 None
ZK973.4 ENSEMBL cdna:known chromosome:CEL140:I:4363416:4364037:1 gene:ZK973.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4363415-4364037(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK973.4
Entrez Gene 191478 Entrez gene
SwissProt Q9N4M2 EMBL-EBI
WormBase CE24750 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF40009 Acetylcholine receptor protein 6 [Caenorhabditis elegans] ref|NP_491354.1| AcetylCholine Receptor family member (acr-6) [Caenorhabditis elegans] 0.0
blast CAE56285 Hypothetical protein CBG23934 [Caenorhabditis briggsae] 0.0
blast CAE56135 Hypothetical protein CBG23747 [Caenorhabditis briggsae] 6.0E-97
blast AAF40008 Hypothetical protein ZK973.4 [Caenorhabditis elegans] ref|NP_491355.1| ZK973.4 [Caenorhabditis elegans] 3.0E-58
blast CAB02735 Hypothetical protein C15H11.1 [Caenorhabditis elegans] ref|NP_506565.1| C15H11.1 [Caenorhabditis elegans] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 1.8E-24
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 7.3E-10
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 6.8E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491355.1 1 5-24
ZK973.4 1 5-24
SNAP00000023508 5 234-256,268-290,294-316,505-527,542-564
GENEFINDER00000023519 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:181551_AT
atgaacgtttgctttgcttttcgtttattgatagatttcctggtactggcgtggattctt
actgttaccgcaactcaatgtgtctcaaagagaaaaattcgaaaagtggataaggaacgt
ggtcgaggaagacggatgagaggaagccggaataaggatgaaaagtcaccgcccaatgaa
gagcatctggaatatacagctattccaccgtctccagccacttcgtcaattaaaaaatca
acgcgaaaagagagaactgagatgaaactacaatcaactcagaatatgcctacagagtcc
accaaccaagcgtccacaactcaacaattgtgcccaacacaagaagatgacttttccgcc
caaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGTTTGCTTTGCTTTTCGTT 549 43 13 Antisense
GATAGATTTCCTGGTACTGGCGTGG 333 421 42 Antisense
CTGGCGTGGATTCTTACTGTTACCG 146 241 58 Antisense
GTTACCGCAACTCAATGTGTCTCAA 139 447 76 Antisense
GTCACCGCCCAATGAAGAGCATCTG 680 465 177 Antisense
GAATATACAGCTATTCCACCGTCTC 168 327 202 Antisense
TCTCCAGCCACTTCGTCAATTAAAA 680 609 223 Antisense
AGAATATGCCTACAGAGTCCACCAA 469 75 293 Antisense
CCAAGCGTCCACAACTCAACAATTG 240 277 318 Antisense
CAACTCAACAATTGTGCCCAACACA 442 187 329 Antisense
CAAGAAGATGACTTTTCCGCCCAAA 176 185 352 Antisense
Sequence Source Affymetrix Proprietary Database