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[181550_at]

Description R10D12.6 /REP_DB=WormBase Gene ID /WP=CE12682 /TR=P92009 /GB=CAB03250.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 31.2
(-2.1)
P 		15.7
(-3)
A 		50.6
(-1.1)
A 		123.1
(3)
P 		107
B 57.7
(3)
P 		41.3
(-2.1)
A 		38.5
(-3)
A 		48.3
(0.1)
P 		19
C 39.3
(-1.3)
P 		21
(-2.2)
A 		4.4
(-3)
A 		125.2
(3)
P 		121
avr 42.7
(-1.6) 		26
(-3) 		31.2
(-2.6) 		98.9
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 55.4
(3)
P 		16.6
(-2.8)
A 		38
(0.4)
P 		17.6
(-2.7)
A 		29.4
(-0.9)
A 		15.3
(-3)
A 		40
B 55.7
(3)
P 		21.3
(-1.2)
A 		35.6
(0.5)
P 		35.6
(0.5)
A 		38.5
(0.9)
A 		6.7
(-3)
A 		49
C 17.6
(-3)
A 		67.5
(3)
P 		19.4
(-2.8)
A 		24.1
(-2.2)
A 		25.5
(-2.1)
A 		34.4
(-1)
A 		50
avr 42.9
(3) 		35.1
(1.1) 		31
(0) 		25.8
(-1.3) 		31.1
(0.1) 		18.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.4
(0.3)
P 		3.4
(-3)
A 		13.2
(1)
A 		18
(3)
P 		15
B 18.4
(3)
P 		10.2
(-2.2)
A 		8.9
(-3)
A 		10.3
(-2.1)
P 		10
C 13
(0.5)
P 		6
(-1.6)
A 		1.5
(-3)
A 		21.1
(3)
P 		20
avr 14.3
(1.7) 		6.5
(-3) 		7.9
(-2.2) 		16.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.2
(3)
P 		5.9
(-1)
A 		8.3
(1.2)
P 		4.5
(-2.3)
A 		8.9
(1.8)
A 		3.7
(-3)
A 		7
B 19.4
(3)
P 		7.1
(-1.4)
A 		8.6
(-0.8)
P 		9.4
(-0.6)
A 		15.6
(1.7)
A 		2.5
(-3)
A 		17
C 6.5
(-2.4)
A 		20.6
(3)
P 		4.9
(-3)
A 		4.9
(-3)
A 		8.3
(-1.7)
A 		11.5
(-0.5)
A 		16
avr 12
(3) 		11.2
(2.2) 		7.3
(-1.6) 		6.3
(-2.6) 		10.9
(1.9) 		5.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12719
Sequence Type Exemplar sequence
Representative Public ID R10D12.6 NCBI
Target Description R10D12.6 /REP_DB=WormBase Gene ID /WP=CE12682 /TR=P92009 /GB=CAB03250.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074060 NCBI Caenorhabditis elegans R10D12.6 (R10D12.6) mRNA, complete cds. 11/11 None
SNAP00000021051 ENSEMBL cdna:SNAP chromosome:CEL140:V:13951908:13952229:1 11/11 None
R10D12.6 ENSEMBL cdna:known chromosome:CEL140:V:13951908:13952229:1 gene:R10D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13951907-13952229(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10D12.6
Entrez Gene 187763 Entrez gene
SwissProt P92009 EMBL-EBI
WormBase CE12682 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03250 Hypothetical protein R10D12.6 [Caenorhabditis elegans] ref|NP_506461.1| R10D12.6 [Caenorhabditis elegans] 7.0E-41
blast CAB03247 Hypothetical protein R10D12.7 [Caenorhabditis elegans] ref|NP_506462.2| R10D12.7 [Caenorhabditis elegans] 5.0E-29
blast CAB03297 Hypothetical protein T06C12.9 [Caenorhabditis elegans] ref|NP_506970.1| T06C12.9 [Caenorhabditis elegans] 8.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 1.1E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506461.1 2 27-44,51-73
R10D12.6 2 27-44,51-73
SNAP00000021051 2 27-44,51-73
Sequence
Target Sequence 
>C. ELEGANS:181550_AT
ggagctgtcagaagtgtctgtggtttctgtatccgaagaagaagcaaaattttatattga
aacggataatgatcgacttgttatggcgcttatgtggctaattttgccaccaatggcagt
gtacttcaaaagtcgaggatgtacaaaacatgtttgtctaaacgttcttctatatttttt
cttgatccttccgtcttacatacatgcaacttggtattgttttgtacgaggacgacagtg
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGTCAGAAGTGTCTGTGGTT 675 521 15 Antisense
GTGTCTGTGGTTTCTGTATCCGAAG 299 487 28 Antisense
ATCGACTTGTTATGGCGCTTATGTG 390 37 86 Antisense
ATGGCGCTTATGTGGCTAATTTTGC 604 53 97 Antisense
GCAGTGTACTTCAAAAGTCGAGGAT 127 311 130 Antisense
GTTTGTCTAAACGTTCTTCTATATT 57 453 166 Antisense
TATATTTTTTCTTGATCCTTCCGTC 437 661 185 Antisense
ATCCTTCCGTCTTACATACATGCAA 420 39 199 Antisense
CCGTCTTACATACATGCAACTTGGT 415 265 205 Antisense
GCAACTTGGTATTGTTTTGTACGAG 388 317 220 Antisense
GTTTTGTACGAGGACGACAGTGTGA 586 445 233 Antisense
Sequence Source Affymetrix Proprietary Database