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[181549_at]

Description Y37H9A.2 /REP_DB=WormBase Gene ID /WP=CE20228 /TR=Q9XWW6 /GB=CAA21523.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 14
(3)
A 		6.3
(-3)
A 		8.5
(-1.3)
A 		11.8
(1.3)
A 		8
B 18.3
(-1.1)
A 		12.9
(-2.2)
A 		38
(3)
A 		9
(-3)
A 		29
C 14.2
(3)
A 		5.6
(-1.4)
A 		2.6
(-3)
A 		12.4
(2.1)
A 		12
avr 15.5
(2.3) 		8.3
(-3) 		16.4
(3) 		11.1
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.4
(-2.6)
A 		2.7
(-3)
A 		4.7
(-2.5)
A 		25.8
(3)
A 		5.6
(-2.2)
A 		2.9
(-2.9)
A 		23
B 3.3
(-2.6)
A 		30.4
(3)
A 		5.4
(-2.2)
A 		3.2
(-2.6)
A 		6.7
(-1.9)
A 		1.4
(-3)
A 		29
C 21.4
(0.6)
A 		15.7
(-0.5)
A 		6.7
(-2.2)
A 		33.5
(3)
A 		4.2
(-2.7)
A 		2.7
(-3)
A 		31
avr 9.7
(-0.6) 		16.3
(1.5) 		5.6
(-1.9) 		20.8
(3) 		5.5
(-2) 		2.3
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.1
(3)
A 		1.4
(-3)
A 		2.2
(-1.7)
A 		1.7
(-2.5)
A 		4
B 5.8
(0.4)
A 		3.2
(-1.9)
A 		8.8
(3)
A 		1.9
(-3)
A 		7
C 4.7
(3)
A 		1.6
(-1.9)
A 		0.9
(-3)
A 		2.1
(-1.1)
A 		4
avr 5.2
(3) 		2.1
(-2.6) 		4
(0.8) 		1.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1
(-2.7)
A 		1
(-2.7)
A 		6.5
(3)
A 		1.7
(-2)
A 		0.7
(-3)
A 		6
B 1.2
(-2.6)
A 		10.1
(3)
A 		1.3
(-2.5)
A 		0.8
(-2.8)
A 		2.7
(-1.6)
A 		0.5
(-3)
A 		10
C 7.9
(3)
A 		4.8
(0.3)
A 		1.7
(-2.3)
A 		6.7
(2)
A 		1.4
(-2.6)
A 		0.9
(-3)
A 		7
avr 3.3
(0.4) 		5.3
(3) 		1.3
(-2.2) 		4.7
(2.2) 		1.9
(-1.4) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2146
Sequence Type Exemplar sequence
Representative Public ID Y37H9A.2 NCBI
Target Description Y37H9A.2 /REP_DB=WormBase Gene ID /WP=CE20228 /TR=Q9XWW6 /GB=CAA21523.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061010 NCBI Caenorhabditis elegans Y37H9A.2 (Y37H9A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010056 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13787899:13789520:-1 11/11 None
SNAP00000010048 ENSEMBL cdna:SNAP chromosome:CEL140:I:13788047:13803852:-1 11/11 None
Y37H9A.2 ENSEMBL cdna:known chromosome:CEL140:I:13787899:13789520:-1 gene:Y37H9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13787829-13789451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H9A.2
Entrez Gene 189638 Entrez gene
SwissProt Q9XWW6 EMBL-EBI
WormBase CE20228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21523 Hypothetical protein Y37H9A.2 [Caenorhabditis elegans] ref|NP_493411.1| Y37H9A.2 [Caenorhabditis elegans] 1.0E-171
blast CAA21523 Hypothetical protein Y37H9A.2 [Caenorhabditis elegans] ref|NP_493411.1| Y37H9A.2 [Caenorhabditis elegans] 1.0E-125
blast CAB63351 Hypothetical protein Y37H9A.6 [Caenorhabditis elegans] ref|NP_493413.1| NuDiX family member (ndx-4) [Caenorhabditis elegans] sp|Q9U2M7|AP4A_CAEEL Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Ap4Aase) pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary Complex pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary Complex pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase 7.0E-49
blast CAE68019 Hypothetical protein CBG13634 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 3.2E-17
Sequence
Target Sequence 
>C. ELEGANS:181549_AT
gtcctcgcggagcaattttcaaacctcaagaggtgactcactcgacggagttctctcctc
ttttcggtctccgaacacgcttgatcgaacatttattgtttcgacgcgtgcgtcccactt
aactacaccatcggcgtcccttcagagtgcccatacggtcaggattgcagacaccggatt
ccttggagcaccagaaatacaatcgagtcgtagtggatcacgttctcggtttcctacgga
actgtcacttcacacaatccagccaactctatcgtatgagactgccccaacggatgctac
ggccgatcggacgtttgtccaacccaacgccaccgagctcagcggaaaccggagcagaaa
tcaagcagccccgacaggttcgagatcaggttcccgttcgagaacttcagctgcttcaaa
tgtcggagctggtcgctctcgagacgactcttcagttcgtaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCGCGGAGCAATTTTCAAACC 68 475 372 Antisense
GTCTCCGAACACGCTTGATCGAACA 245 471 438 Antisense
AGAGTGCCCATACGGTCAGGATTGC 77 67 515 Antisense
TGCAGACACCGGATTCCTTGGAGCA 94 569 537 Antisense
GAGTCGTAGTGGATCACGTTCTCGG 408 399 576 Antisense
GAACTGTCACTTCACACAATCCAGC 76 349 610 Antisense
CAATCCAGCCAACTCTATCGTATGA 505 181 626 Antisense
ATCGTATGAGACTGCCCCAACGGAT 514 35 642 Antisense
CTACGGCCGATCGGACGTTTGTCCA 673 225 668 Antisense
GACAGGTTCGAGATCAGGTTCCCGT 266 363 744 Antisense
GAGACGACTCTTCAGTTCGTACCAA 463 391 812 Antisense
Sequence Source Affymetrix Proprietary Database