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[181548_at]

Description T07H3.5 /REP_DB=WormBase Gene ID /WP=CE19566 /TR=O76609 /GB=AAC26308.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 43      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 8.2
(-3)
A 		18.6
(0.9)
A 		8.5
(-2.9)
A 		24
(3)
A 		16
B 15.1
(-2.3)
A 		77
(3)
A 		22.1
(-1.7)
A 		7.3
(-3)
A 		70
C 56.6
(3)
A 		30.8
(-0.9)
A 		16.6
(-3)
A 		34
(-0.4)
A 		40
avr 26.6
(-0.5) 		42.1
(3) 		15.7
(-3) 		21.8
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 13.4
(-2.9)
A 		53.1
(-1.8)
A 		10.5
(-3)
A 		185.7
(2)
P 		221.6
(3)
P 		137.9
(0.6)
A 		211
B 5.3
(-3)
A 		9.3
(-2.9)
A 		13.8
(-2.8)
A 		174.1
(1.7)
P 		221.5
(3)
P 		89.4
(-0.7)
A 		216
C 26.2
(-2.2)
A 		27.9
(-2.2)
A 		3.2
(-3)
A 		168.6
(2.5)
P 		184.2
(3)
P 		123.8
(1)
A 		181
avr 15
(-2.8) 		30.1
(-2.4) 		9.2
(-3) 		176.1
(2) 		209.1
(3) 		117
(0.2) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3
(-0.3)
A 		4
(3)
A 		2.2
(-3)
A 		3.5
(1.3)
A 		2
B 4.8
(-1.9)
A 		19
(3)
A 		5.1
(-1.8)
A 		1.6
(-3)
A 		17
C 18.7
(3)
A 		8.9
(-1.5)
A 		5.8
(-3)
A 		5.7
(-3)
A 		13
avr 8.8
(1.5) 		10.6
(3) 		4.4
(-2.3) 		3.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 2.5
(-3)
A 		18.9
(-1.5)
A 		2.3
(-3)
A 		47.1
(1.2)
P 		66.9
(3)
P 		33.6
(-0.1)
A 		65
B 1.9
(-3)
A 		3.1
(-2.9)
A 		3.4
(-2.9)
A 		46.1
(0)
P 		90
(3)
P 		33.3
(-0.9)
A 		88
C 9.7
(-2.1)
A 		8.5
(-2.2)
A 		0.8
(-3)
A 		33.9
(0.4)
P 		59.6
(3)
P 		41.4
(1.1)
A 		59
avr 4.7
(-2.8) 		10.2
(-2.3) 		2.2
(-3) 		42.4
(0.4) 		72.2
(3) 		36.1
(-0.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5135
Sequence Type Exemplar sequence
Representative Public ID T07H3.5 NCBI
Target Description T07H3.5 /REP_DB=WormBase Gene ID /WP=CE19566 /TR=O76609 /GB=AAC26308.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061602 NCBI Caenorhabditis elegans C-type LECtin family member (clec-20) (clec-20) mRNA, complete cds. 11/11 None
SNAP00000009953 ENSEMBL cdna:SNAP chromosome:CEL140:II:1593485:1595242:-1 11/11 None
GENEFINDER00000009964 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1593485:1594330:-1 11/11 None
T07H3.5 ENSEMBL cdna:known chromosome:CEL140:II:1593485:1595242:-1 gene:T07H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1593483-1595241(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-20
Ensembl T07H3.5
Entrez Gene 188251 Entrez gene
SwissProt O76609 EMBL-EBI
WormBase CE19566 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 0.0
blast NP_494003 C-type LECtin family member (clec-20) [Caenorhabditis elegans] gb|AAC26308.1| Hypothetical protein T07H3.5 [Caenorhabditis elegans] 1.0E-163
blast NP_494002 C-type LECtin family member (clec-21) [Caenorhabditis elegans] gb|AAC26312.2| Hypothetical protein T07H3.4 [Caenorhabditis elegans] 1.0E-109
blast T33375 hypothetical protein T07H3.4 - Caenorhabditis elegans 3.0E-98
blast NP_494002 C-type LECtin family member (clec-21) [Caenorhabditis elegans] gb|AAC26312.2| Hypothetical protein T07H3.4 [Caenorhabditis elegans] 2.0E-88
blast T33375 hypothetical protein T07H3.4 - Caenorhabditis elegans 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 6.0E-6
Pfam IPR001304 EMBL-EBI C-type lectin 2.4E-8
Pfam IPR000859 EMBL-EBI CUB 1.9E-6
Pfam IPR001304 EMBL-EBI C-type lectin 2.4E-8
Pfam IPR000859 EMBL-EBI CUB 1.9E-6
Pfam IPR001304 EMBL-EBI C-type lectin 2.4E-8
Pfam IPR000859 EMBL-EBI CUB 1.9E-6
Sequence
Target Sequence 
>C. ELEGANS:181548_AT
ggaggcatgtggacgttatcagggcgccctagctggatagatggatctcgctgggatcac
gacaaaatagactcactacgtaaacgagaaggtgcatgcctcgtagtttctggagagaag
agtaacgagagacagccctggggactgtggtataccggaaattgtgactatgatagaaag
ttcttctgcaagcgccctgctggtgaaaagtgtaaccctgaccgacctgaagatcccaca
ccaccggtcttgtatacatgcaacactacgatcttggtcacacaagggttaattatagct
ccaccgataacagaagcaggccttgaacatggcttttgctactatcatatttatacagtg
ggatccagtagcatcatgttaacgttcacacaattagacatgcacccaaactatcatgaa
ctaaatgcctatgatggtgactcggagaacagtcgtttaatttcgacaatacacaattac
aatagcccaacactcacctcaagtggaaatgcaatgtttgtaacattccgatcaaatggt
accagtacaaattggtttggattccatgccagattcactgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCATGTGGACGTTATCAGGGC 199 515 649 Antisense
GTTATCAGGGCGCCCTAGCTGGATA 660 447 663 Antisense
GATGGATCTCGCTGGGATCACGACA 549 407 688 Antisense
GTGCATGCCTCGTAGTTTCTGGAGA 299 481 740 Antisense
GAGACAGCCCTGGGGACTGTGGTAT 13 393 777 Antisense
TGCAAGCGCCCTGCTGGTGAAAAGT 537 575 835 Antisense
ACCACCGGTCTTGTATACATGCAAC 521 85 888 Antisense
GCAGGCCTTGAACATGGCTTTTGCT 513 309 964 Antisense
GTTCACACAATTAGACATGCACCCA 321 445 1032 Antisense
AATTACAATAGCCCAACACTCACCT 88 177 1123 Antisense
GGATTCCATGCCAGATTCACTGAGT 121 509 1207 Antisense
Sequence Source Affymetrix Proprietary Database