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[181547_s_at]

Description C44E4.7 /REP_DB=WormBase Gene ID /WP=CE23597 /TR=Q9TXR0 /GB=AAD47122.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 49.3
(0.1)
A 		77
(3)
A 		20.2
(-3)
A 		44.5
(-0.4)
A 		57
B 78.3
(1.9)
P 		91.2
(3)
P 		19.9
(-3)
A 		87.3
(2.7)
A 		71
C 87.9
(3)
P 		75.2
(1.2)
A 		63
(-0.5)
A 		45.7
(-3)
A 		42
avr 71.8
(1.8) 		81.1
(3) 		34.4
(-3) 		59.2
(0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 7
(-3)
A 		64.7
(3)
M 		40.5
(0.5)
A 		38.2
(0.2)
A 		31
(-0.5)
A 		15.9
(-2.1)
A 		58
B 18.8
(-1)
A 		39.6
(2.1)
A 		14.7
(-1.6)
A 		5.6
(-3)
A 		45.8
(3)
A 		39.5
(2.1)
A 		40
C 46.4
(-0.4)
A 		45.6
(-0.4)
A 		96.4
(3)
A 		7.1
(-3)
A 		14.7
(-2.5)
A 		43.2
(-0.6)
A 		89
avr 24.1
(-1.7) 		50
(2.9) 		50.5
(3) 		17
(-3) 		30.5
(-0.6) 		32.9
(-0.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 18
(3)
A 		16.7
(2.4)
A 		5.3
(-3)
A 		6.5
(-2.4)
A 		13
B 25
(3)
P 		22.5
(2.3)
P 		4.6
(-3)
A 		18.6
(1.1)
A 		20
C 29.1
(3)
P 		21.6
(0.9)
A 		22
(1)
A 		7.7
(-3)
A 		21
avr 24
(3) 		20.3
(1.3) 		10.6
(-3) 		10.9
(-2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.3
(-3)
A 		23
(3)
M 		8.8
(-0.9)
A 		9.7
(-0.7)
A 		9.3
(-0.8)
A 		3.9
(-2.3)
A 		22
B 6.6
(-1.2)
A 		13.2
(1.1)
A 		3.6
(-2.3)
A 		1.5
(-3)
A 		18.6
(3)
A 		14.7
(1.6)
A 		17
C 17.2
(1.1)
A 		13.9
(0.2)
A 		24.5
(3)
A 		1.4
(-3)
A 		4.7
(-2.1)
A 		14.4
(0.4)
A 		23
avr 8.4
(-1) 		16.7
(3) 		12.3
(0.9) 		4.2
(-3) 		10.9
(0.2) 		11
(0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181547_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.971
Sequence Type Exemplar sequence
Representative Public ID C44E4.7 NCBI
Target Description C44E4.7 /REP_DB=WormBase Gene ID /WP=CE23597 /TR=Q9TXR0 /GB=AAD47122.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059008 NCBI Caenorhabditis elegans C44E4.7 (C44E4.7) mRNA, complete cds. 11/11 A 
SNAP00000019658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4610269:4633348:-1 11/11 None
GENEFINDER00000019663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4610269:4633348:-1 11/11 None
C44E4.7 ENSEMBL cdna:known chromosome:CEL140:I:4623461:4629468:-1 gene:C44E4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4623460-4629468(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44E4.7
Entrez Gene 172069 Entrez gene
SwissProt Q9TXR0 EMBL-EBI
WormBase CE23597 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD47122 Hypothetical protein C44E4.7 [Caenorhabditis elegans] ref|NP_491409.1| C44E4.7 [Caenorhabditis elegans] 0.0
blast D87757 protein C44E4.1a [imported] - Caenorhabditis elegans 0.0
blast AAM15563 Hypothetical protein C44E4.1c [Caenorhabditis elegans] ref|NP_740838.1| C44E4.1c [Caenorhabditis elegans] 0.0
blast AAD47119 Hypothetical protein C44E4.1a [Caenorhabditis elegans] ref|NP_491407.1| C44E4.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Sequence
Target Sequence 
>C. ELEGANS:181547_S_AT
tgcacgcacttcgtacagaaaccgaacaaattccattcaatgccagaagtcttcatgttt
ccggtaatcgattggtcgtttgtggacaatacgagttctttgcgctgcgattttcacctc
aaggagatgttatcgatagagcacatattaaattgttggaaaatggagcctcatcttcta
tgaataataatccggttgttcgtgcaaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACGCACTTCGTACAGAAACCGA 550 575 3122 Antisense
GAAACCGAACAAATTCCATTCAATG 197 359 3139 Antisense
ATTCCATTCAATGCCAGAAGTCTTC 398 7 3151 Antisense
GCCAGAAGTCTTCATGTTTCCGGTA 147 279 3163 Antisense
TGTTTCCGGTAATCGATTGGTCGTT 575 449 3177 Antisense
CGATTGGTCGTTTGTGGACAATACG 360 247 3190 Antisense
GGACAATACGAGTTCTTTGCGCTGC 614 525 3205 Antisense
ATACGAGTTCTTTGCGCTGCGATTT 294 23 3210 Antisense
GCTGCGATTTTCACCTCAAGGAGAT 185 297 3225 Antisense
GAAAATGGAGCCTCATCTTCTATGA 703 353 3280 Antisense
ATAATCCGGTTGTTCGTGCAAAGTT 267 25 3308 Antisense
Sequence Source Affymetrix Proprietary Database