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[181546_at]

Description C44E4.7 /REP_DB=WormBase Gene ID /WP=CE23597 /TR=Q9TXR0 /GB=AAD47122.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 89.3
(0.9)
A 		95.7
(1.5)
A 		51.3
(-3)
A 		110.5
(3)
A 		59
B 105.1
(3)
M 		36.9
(-2)
A 		23.6
(-3)
A 		47.7
(-1.2)
A 		82
C 96.1
(1.8)
A 		86.5
(0.6)
A 		58.1
(-3)
A 		105.6
(3)
A 		48
avr 96.8
(3) 		73
(0.3) 		44.3
(-3) 		87.9
(2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 37.4
(-1.5)
A 		72.5
(3)
A 		34
(-2)
A 		26.1
(-3)
A 		63.9
(1.9)
A 		31.3
(-2.3)
A 		46
B 9.7
(-3)
A 		41.3
(-0)
A 		55.3
(1.3)
A 		73
(3)
A 		59.7
(1.7)
A 		27.2
(-1.3)
A 		63
C 67.6
(3)
A 		43
(-1.8)
A 		37.5
(-2.9)
A 		48.2
(-0.8)
A 		53.3
(0.2)
A 		36.9
(-3)
A 		31
avr 38.2
(-1.6) 		52.3
(1.5) 		42.3
(-0.7) 		49.1
(0.8) 		59
(3) 		31.8
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 32.5
(3)
A 		20.8
(-0.7)
A 		13.4
(-3)
A 		16.2
(-2.1)
A 		19
B 33.5
(3)
M 		9.1
(-2.2)
A 		5.5
(-3)
A 		10.2
(-2)
A 		28
C 31.8
(3)
A 		24.9
(0)
A 		20.3
(-1.9)
A 		17.8
(-3)
A 		14
avr 32.6
(3) 		18.3
(-1.4) 		13.1
(-3) 		14.7
(-2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.9
(-2.9)
A 		25.8
(3)
A 		7.4
(-2.8)
A 		6.6
(-3)
A 		19.3
(1)
A 		7.6
(-2.7)
A 		19
B 3.4
(-3)
A 		13.8
(-0)
A 		13.4
(-0.1)
A 		19.3
(1.6)
A 		24.3
(3)
A 		10.2
(-1)
A 		21
C 25.1
(3)
A 		13.1
(-1.6)
A 		9.5
(-3)
A 		9.7
(-2.9)
A 		17.2
(-0)
A 		12.4
(-1.9)
A 		16
avr 11.8
(-2) 		17.6
(1.4) 		10.1
(-3) 		11.9
(-1.9) 		20.3
(3) 		10.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.971
Sequence Type Exemplar sequence
Representative Public ID C44E4.7 NCBI
Target Description C44E4.7 /REP_DB=WormBase Gene ID /WP=CE23597 /TR=Q9TXR0 /GB=AAD47122.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059008 NCBI Caenorhabditis elegans C44E4.7 (C44E4.7) mRNA, complete cds. 11/11 A 
SNAP00000019658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4610269:4633348:-1 11/11 None
GENEFINDER00000019663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4610269:4633348:-1 11/11 None
C44E4.7 ENSEMBL cdna:known chromosome:CEL140:I:4623461:4629468:-1 gene:C44E4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4623460-4629468(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44E4.7
Entrez Gene 172069 Entrez gene
SwissProt Q9TXR0 EMBL-EBI
WormBase CE23597 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD47122 Hypothetical protein C44E4.7 [Caenorhabditis elegans] ref|NP_491409.1| C44E4.7 [Caenorhabditis elegans] 0.0
blast D87757 protein C44E4.1a [imported] - Caenorhabditis elegans 0.0
blast AAM15563 Hypothetical protein C44E4.1c [Caenorhabditis elegans] ref|NP_740838.1| C44E4.1c [Caenorhabditis elegans] 0.0
blast AAD47119 Hypothetical protein C44E4.1a [Caenorhabditis elegans] ref|NP_491407.1| C44E4.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Sequence
Target Sequence 
>C. ELEGANS:181546_AT
tgaagctgtcgactttgccaatcaaaaagctttacaagtgacagaggagcggctggcagt
cttagaatccttcaatgatatggatgatgttataatttctgaaaaagaaaagtttattga
accactcgaatcaggacatttccttccaacacggagagatgatctaccagtccaagaact
tcgtgttgcttcttctcaacacaaaattcgagaattatcagatattattaagttggacga
tggaacagagcttcttgtattgatacctgaaagtattcaaacatgccttcagctgcacta
tatggatacgagaactaatttgattcaaggaatgcacgcacttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTGTCGACTTTGCCAATCAA 333 573 2790 Antisense
GTGACAGAGGAGCGGCTGGCAGTCT 454 481 2827 Antisense
GGCTGGCAGTCTTAGAATCCTTCAA 258 541 2840 Antisense
GAACCACTCGAATCAGGACATTTCC 227 345 2908 Antisense
GACATTTCCTTCCAACACGGAGAGA 666 369 2924 Antisense
ATGATCTACCAGTCCAAGAACTTCG 413 45 2948 Antisense
AAGAACTTCGTGTTGCTTCTTCTCA 48 153 2963 Antisense
AACAGAGCTTCTTGTATTGATACCT 336 137 3033 Antisense
AGTATTCAAACATGCCTTCAGCTGC 401 63 3061 Antisense
GCCTTCAGCTGCACTATATGGATAC 176 281 3074 Antisense
GATTCAAGGAATGCACGCACTTCGT 256 429 3111 Antisense
Sequence Source Affymetrix Proprietary Database