[Home] | [Total List]

[181544_at]

Description Y53F4B.6 /REP_DB=WormBase Gene ID /WP=CE22394 /TR=Q9NAC3 /GB=CAB61075.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 18.3
(-0.9)
A 		1.8
(-3)
A 		36.7
(1.5)
A 		48
(3)
A 		46
B 30.7
(2)
A 		30.5
(1.9)
A 		18.3
(-3)
A 		33.2
(3)
A 		15
C 20.3
(-1.5)
A 		50
(2.9)
A 		9.9
(-3)
A 		51
(3)
M 		41
avr 23.1
(-2.6) 		27.4
(-1.5) 		21.6
(-3) 		44.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.9
(-1.5)
A 		26
(-0.2)
A 		10.7
(-2)
A 		5.4
(-2.6)
A 		53.7
(3)
A 		2
(-3)
A 		52
B 34
(3)
A 		1.3
(-3)
A 		13.4
(-0.8)
A 		24.3
(1.2)
A 		1.8
(-2.9)
A 		22.7
(0.9)
A 		33
C 16.5
(-0.3)
A 		32.9
(2.6)
A 		35.3
(3)
A 		6.2
(-2.2)
A 		28.8
(1.8)
A 		1.6
(-3)
A 		34
avr 21.8
(1) 		20.1
(0.5) 		19.8
(0.4) 		12
(-2) 		28.1
(3) 		8.8
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.7
(1.1)
A 		0.4
(-3)
A 		9.6
(3)
A 		7
(1.3)
A 		9
B 9.8
(3)
A 		7.5
(0.5)
A 		4.2
(-3)
A 		7.1
(0.1)
A 		6
C 6.7
(-1.2)
A 		14.4
(3)
A 		3.5
(-3)
A 		8.6
(-0.2)
M 		11
avr 7.7
(3) 		7.4
(2.1) 		5.8
(-3) 		7.6
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.7
(-2.2)
A 		9.3
(0.4)
A 		2.3
(-2.3)
A 		1.4
(-2.7)
A 		16.2
(3)
A 		0.5
(-3)
A 		16
B 11.8
(3)
A 		0.4
(-3)
A 		3.3
(-1.5)
A 		6.4
(0.2)
A 		0.7
(-2.8)
A 		8.5
(1.3)
A 		11
C 6.1
(0.5)
A 		10
(3)
A 		9
(2.4)
A 		1.2
(-2.6)
A 		9.3
(2.6)
A 		0.5
(-3)
A 		10
avr 6.9
(1.1) 		6.6
(0.8) 		4.9
(-1) 		3
(-3) 		8.7
(3) 		3.2
(-2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3333
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.6 NCBI
Target Description Y53F4B.6 /REP_DB=WormBase Gene ID /WP=CE22394 /TR=Q9NAC3 /GB=CAB61075.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064690
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043040 ENSEMBL cdna:SNAP chromosome:CEL140:II:14979845:14987115:1 10/11 None
GENEFINDER00000043139 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14985590:14987115:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064690 2/11 Cross Hyb Matching Probes A 
Y53F4B.6 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14985586-14987112(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54449 Hypothetical protein Y48B6A.3 [Caenorhabditis elegans] ref|NP_496958.1| Y48B6A.3 [Caenorhabditis elegans] 9.0E-41
blast CAB54449 Hypothetical protein Y48B6A.3 [Caenorhabditis elegans] ref|NP_496958.1| Y48B6A.3 [Caenorhabditis elegans] 2.0E-40
blast CAB61075 Hypothetical protein Y53F4B.6 [Caenorhabditis elegans] ref|NP_497091.2| Y53F4B.6 [Caenorhabditis elegans] 1.0E-32
blast CAE73451 Hypothetical protein CBG20900 [Caenorhabditis briggsae] 3.0E-29
blast CAE73451 Hypothetical protein CBG20900 [Caenorhabditis briggsae] 5.0E-29
blast XP_694436 PREDICTED: similar to 5-3 exoribonuclease 2 (Dhm1 protein) [Danio rerio] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:181544_AT
tgtcgattctgagctcaatgttgcgatgaacatgctgaaaaaaaatttctggaccaactg
cggaatatgcgtgctctacgtggatcccgagtacccggaaaactatatattcccagcgat
ccgtctcgacggagccaaggagcccgagaaaacgctgaaacccgacgactggaacgatag
acgagacgggtggtatcagccacaagcgggctttaatcgaaacgcgccacgtggaagtct
ggatcaatcgggccatcgacaagtgcatcactatgtgagaggtggtgatggcggcggcgg
ataccgaggatacagctatgatgatcggagaggcggtggcagtggtggtggtggatacaa
cgatcgtcaagatttcggccgaaactatggaggaagagacggtggaggtccccagagata
ccatgatcagcagcgtcaaggaggctatcaaggaggcggttatggtggcggaggatccta
tcatcaaccgtacaatcaggatcagagacgtggaggacgtggtggtggaccaccaggata
ccagagaccaccgtatcgaggtggcagaggcggcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGATTCTGAGCTCAATGTTGCG 595 553 264 Antisense
AATATGCGTGCTCTACGTGGATCCC 589 173 327 Antisense
AAACTATATATTCCCAGCGATCCGT 59 129 363 Antisense
GAACGATAGACGAGACGGGTGGTAT 646 343 435 Antisense
GGGTGGTATCAGCCACAAGCGGGCT 257 497 451 Antisense
GCGGGCTTTAATCGAAACGCGCCAC 307 269 469 Antisense
GGCGGATACCGAGGATACAGCTATG 452 539 559 Antisense
GGCGGTTATGGTGGCGGAGGATCCT 455 539 718 Antisense
GAGGATCCTATCATCAACCGTACAA 539 401 734 Antisense
CCACCAGGATACCAGAGACCACCGT 252 273 793 Antisense
TATCGAGGTGGCAGAGGCGGCGGTG 555 651 817 Antisense
Sequence Source Affymetrix Proprietary Database