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[181543_at]

Description C43G2.1 /REP_DB=WormBase Gene ID /WP=CE27848 /TR=Q94177 /GB=AAB09107.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 97      6grp_total > 57      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4637
1 2 3 4 range
A 2019.8
(-1.6)
P 		1253.6
(-2.6)
P 		942.4
(-3)
P 		5468.5
(3)
P 		4526
B 2434.8
(-1.2)
P 		1156.9
(-2.9)
P 		1102.2
(-3)
P 		5579.4
(3)
P 		4477
C 2066.1
(-1.7)
P 		1274.9
(-2.9)
P 		1190.1
(-3)
P 		5109.8
(3)
P 		3920
avr 2173.6
(-1.5) 		1228.5
(-2.8) 		1078.2
(-3) 		5385.9
(3) 		4308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1212
1 2 3 4 5 6 range
A 979.1
(-1.7)
P 		978.8
(-1.7)
P 		751
(-2.8)
P 		715.2
(-3)
P 		779.5
(-2.7)
P 		1911.9
(3)
P 		1197
B 992
(-0.8)
P 		850.1
(-1.9)
P 		739.8
(-2.7)
P 		733.8
(-2.7)
P 		700
(-3)
P 		1492.9
(3)
P 		793
C 1106.8
(-0.9)
P 		878.6
(-2.3)
P 		884.1
(-2.3)
P 		774.6
(-3)
P 		773.2
(-3)
P 		1714.6
(3)
P 		941
avr 1026
(-1.2) 		902.5
(-2) 		791.6
(-2.7) 		741.2
(-3) 		750.9
(-2.9) 		1706.5
(3) 		965
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 943
1 2 3 4 range
A 735.4
(2.3)
P 		272.1
(-2.7)
P 		246.4
(-3)
P 		800.5
(3)
P 		554
B 776.4
(0.3)
P 		285.7
(-2.8)
P 		255.4
(-3)
P 		1189
(3)
P 		934
C 683.9
(0.8)
P 		366.5
(-3)
P 		414.8
(-2.4)
P 		861.6
(3)
P 		495
avr 731.9
(1) 		308.1
(-3) 		305.5
(-3) 		950.4
(3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 180.5
(-2.7)
P 		348.1
(0.7)
P 		163.5
(-3)
P 		181.4
(-2.6)
P 		235.2
(-1.6)
P 		465.5
(3)
P 		302
B 345.2
(-0.4)
P 		283
(-1.4)
P 		179.6
(-3)
P 		194.4
(-2.8)
P 		284.4
(-1.3)
P 		556.7
(3)
P 		377
C 410.3
(0.7)
P 		268.1
(-1.4)
P 		225
(-2)
P 		155.8
(-3)
P 		250.2
(-1.6)
P 		574
(3)
P 		418
avr 312
(-0.7) 		299.7
(-0.9) 		189.4
(-2.8) 		177.2
(-3) 		256.6
(-1.7) 		532.1
(3) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10882
Sequence Type Exemplar sequence
Representative Public ID C43G2.1 NCBI
Target Description C43G2.1 /REP_DB=WormBase Gene ID /WP=CE27848 /TR=Q94177 /GB=AAB09107.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068597 NCBI Caenorhabditis elegans C43G2.1 (C43G2.1) mRNA, complete cds. 11/11 None
SNAP00000004601 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6552885:6555415:-1 11/11 None
GENEFINDER00000004613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6552885:6555415:-1 11/11 None
C43G2.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:6552076:6555874:-1 gene:C43G2.1 11/11 A 
C43G2.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:6552492:6555422:-1 gene:C43G2.1 11/11 A 
C43G2.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:6552492:6555954:-1 gene:C43G2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6552890-6556477(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43G2.1
Entrez Gene 177416 Entrez gene
SwissProt Q94177 EMBL-EBI
WormBase CE27848 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14536_S_AT expressed protein at
ATGENOME1:20536_S_AT expressed protein at
ATH1-121501:253059_S_AT expressed protein at
ATH1-121501:266075_S_AT expressed protein at
CANINE:1600316_AT similar to adiponectin receptor 1 cfa
CANINE:1584372_AT similar to adiponectin receptor 1 cfa
CANINE_2:CFAAFFX.16230.1.S1_S_AT similar to adiponectin receptor 1 cfa
DROSOPHILA_2:1636967_A_AT dm
DROSGENOME1:154206_AT dm
CHICKEN:GGA.8743.1.S1_AT adiponectin receptor 1 gga
HG-U133_PLUS_2:217748_AT adiponectin receptor 1 hs
PLASMODIUM_ANOPHELES:217748_AT adiponectin receptor 1 hs
HG-U133A:217748_AT adiponectin receptor 1 hs
HG-U133A_2:217748_AT adiponectin receptor 1 hs
HU35KSUBA:H83131_AT adiponectin receptor 1 hs
HU35KSUBB:RC_N38817_AT adiponectin receptor 1 hs
HU35KSUBD:RC_W95063_AT adiponectin receptor 1 hs
U133_X3P:G7705760_3P_AT adiponectin receptor 1 hs
HG-U95B:45809_AT adiponectin receptor 1 hs
MOUSE430_2:1439017_X_AT adiponectin receptor 1 mm
MOE430A:1439017_X_AT adiponectin receptor 1 mm
MOUSE430A_2:1439017_X_AT adiponectin receptor 1 mm
MOE430A:1451311_A_AT adiponectin receptor 1 mm
MOUSE430A_2:1451311_A_AT adiponectin receptor 1 mm
MOUSE430_2:1451311_A_AT adiponectin receptor 1 mm
MU19KSUBB:TC33834_AT Adiponectin receptor 1, mRNA (cDNA clone MGC:6920 IMAGE:2811173) mm
RG-U34B:RC_AA946034_AT adiponectin receptor 1 rn
RG-U34B:RC_AA946034_G_AT adiponectin receptor 1 rn
RG-U34C:AA800560_AT adiponectin receptor 1 rn
RAE230A:1388373_AT adiponectin receptor 1 rn
RAT230_2:1388373_AT adiponectin receptor 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09107 Hypothetical protein C43G2.1 [Caenorhabditis elegans] ref|NP_500998.1| C43G2.1 [Caenorhabditis elegans] sp|Q94177|ADRL_CAEEL ADIPOR-like receptor C43G2.1 0.0
blast CAE61520 Hypothetical protein CBG05420 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.9E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500998.1 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.1 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.3 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
C43G2.1.2 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
SNAP00000004601 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
GENEFINDER00000004613 7 201-223,236-258,273-293,300-319,329-351,363-382,397-419
Sequence
Target Sequence 
>C. ELEGANS:181543_AT
aaagtagtcttctcattcttcttcgctggtgccgttctatgtcttggactctcgttcgca
ttccacactctctcgtgtcattctgtaaatgtcgtgaaaatattttgtaaacttgattac
atgggaatctctttactcattattggatcattcattccatggatctattatggattttat
tgtcggagagaaccaaagattacctatattgcaatggtttctgtacttggaatcggagct
atagtcgtctcgttgtgggataagttcagtgaatcaagattccgaccgatcagagcagct
gtctttgttggaatgggatgtagtggtgtcatcccaactattcactatataataaccgac
ggagttcactctctatttgcggataattcattccattggttacttctgatggcattcctc
tacttacttggagctgggctctatgccacacgaactccagaacgatttttcccaggaaaa
tgtgatatttggttccaatctcatcagctattccacacctgcgtcgttattgctgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTAGTCTTCTCATTCTTCTTCG 83 123 811 Antisense
CACTCTCTCGTGTCATTCTGTAAAT 10 199 876 Antisense
GAATCGGAGCTATAGTCGTCTCGTT 141 329 1040 Antisense
AAGATTCCGACCGATCAGAGCAGCT 163 155 1086 Antisense
GTAGTGGTGTCATCCCAACTATTCA 563 455 1130 Antisense
GACGGAGTTCACTCTCTATTTGCGG 277 377 1168 Antisense
TTCTGATGGCATTCCTCTACTTACT 677 693 1214 Antisense
CTTGGAGCTGGGCTCTATGCCACAC 598 217 1237 Antisense
GAACTCCAGAACGATTTTTCCCAGG 239 349 1262 Antisense
ATTTGGTTCCAATCTCATCAGCTAT 253 19 1297 Antisense
ACACCTGCGTCGTTATTGCTGCATT 408 109 1325 Antisense
Sequence Source Affymetrix Proprietary Database