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[181542_at]

Description C05D12.4 /REP_DB=WormBase Gene ID /WP=CE02972 /TR=Q17658 /GB=CAA90755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 62.4
(3)
M 		49.8
(1.7)
A 		32
(-0.1)
A 		4
(-3)
A 		58
B 39.8
(2.2)
A 		45.2
(3)
M 		14.5
(-1.3)
A 		2.7
(-3)
A 		43
C 53.6
(0.4)
P 		27.4
(-2.6)
A 		24.2
(-3)
A 		75.8
(3)
A 		52
avr 51.9
(3) 		40.8
(0.6) 		23.6
(-3) 		27.5
(-2.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 4.5
(-3)
A 		41.8
(1.4)
P 		36.3
(0.7)
P 		55.7
(3)
A 		32.5
(0.3)
A 		45.2
(1.8)
P 		51
B 13
(-3)
A 		46.3
(0.5)
P 		70.4
(3)
M 		20.5
(-2.2)
A 		31.7
(-1)
A 		36
(-0.6)
P 		57
C 30.9
(-1)
A 		45.7
(1.1)
P 		60
(3)
P 		15.8
(-3)
A 		42.2
(0.6)
A 		21
(-2.3)
A 		44
avr 16.1
(-3) 		44.6
(1.3) 		55.6
(3) 		30.7
(-0.8) 		35.5
(-0.1) 		34.1
(-0.3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.7
(3)
M 		10.8
(-0.2)
A 		8.4
(-0.9)
A 		0.6
(-3)
A 		22
B 12.7
(3)
A 		11.2
(2.3)
M 		3.4
(-1.6)
A 		0.6
(-3)
A 		12
C 17.7
(3)
P 		7.9
(-3)
A 		8.4
(-2.7)
A 		12.8
(0)
A 		10
avr 17.7
(3) 		10
(-0.6) 		6.7
(-2.1) 		4.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.8
(-3)
A 		14.9
(3)
P 		7.9
(0)
P 		14.1
(2.7)
A 		9.8
(0.8)
A 		11
(1.3)
P 		14
B 4.5
(-3)
A 		15.4
(2.2)
P 		17.1
(3)
M 		5.4
(-2.6)
A 		12.9
(1)
A 		13.4
(1.2)
P 		13
C 11.5
(1.1)
A 		14
(2.4)
P 		15.3
(3)
P 		3.2
(-3)
A 		13.7
(2.2)
A 		7
(-1.1)
A 		12
avr 5.6
(-3) 		14.8
(3) 		13.4
(2.1) 		7.6
(-1.7) 		12.1
(1.2) 		10.5
(0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3795
Sequence Type Exemplar sequence
Representative Public ID C05D12.4 NCBI
Target Description C05D12.4 /REP_DB=WormBase Gene ID /WP=CE02972 /TR=Q17658 /GB=CAA90755.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064033 NCBI Caenorhabditis elegans C05D12.4 (C05D12.4) mRNA, complete cds. 11/11 None
SNAP00000031676 ENSEMBL cdna:SNAP chromosome:CEL140:II:11431789:11432610:1 11/11 None
GENEFINDER00000031681 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11431789:11432610:1 11/11 None
C05D12.4 ENSEMBL cdna:known chromosome:CEL140:II:11429889:11432610:1 gene:C05D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11431785-11432607(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D12.4
Entrez Gene 3565230 Entrez gene
SwissProt Q17658 EMBL-EBI
WormBase CE02972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90755 Hypothetical protein C05D12.4 [Caenorhabditis elegans] ref|NP_496434.1| C05D12.4 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:181542_AT
agacgcgctgtaatgtttatggaaaatcaactgattgaaaaagatgcagtgattgaaaaa
aataatcatgttatagctatcaatggagcaaaaatcgaggacaataagaagaggattcaa
gaagaaatgtggaagaaggtgaaggtattggaagatgcttttgatgaaaaagttgaagag
aataatgaggtcatcaaaaaccagaaggaaagtatcgacaagatgcgcatttcgagaaca
gaaacatcagaggagcacaaggaattggtcaagaagatcaatcaaaaaatgaaagatacg
gagacagcttgtagaagatatgaggccaacacgacgcatctaactgctgaactccatcag
accaaagaaactcttcaacttgtggagaaatctctgaaaatgcagacaaactggattgac
actttcctattcgaacattctaaaatgattagtgaagtatgggtgactaatcagaagatg
gcagtgcaatcgaaacaatctgaagatcagctggaagtcttgaaaaagaagaaagacgtt
ttgaaagctaagcaggctgcgcaagagttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGCGCTGTAATGTTTATGGAAA 343 71 205 Antisense
GACAAGATGCGCATTTCGAGAACAG 290 365 421 Antisense
AGATATGAGGCCAACACGACGCATC 404 65 520 Antisense
GACGCATCTAACTGCTGAACTCCAT 229 379 537 Antisense
GAACTCCATCAGACCAAAGAAACTC 215 349 553 Antisense
GAAACTCTTCAACTTGTGGAGAAAT 306 357 571 Antisense
GCAGACAAACTGGATTGACACTTTC 697 309 606 Antisense
GACACTTTCCTATTCGAACATTCTA 143 367 622 Antisense
GATGGCAGTGCAATCGAAACAATCT 134 407 681 Antisense
AAGACGTTTTGAAAGCTAAGCAGGC 12 153 737 Antisense
TAAGCAGGCTGCGCAAGAGTTGGAA 528 637 753 Antisense
Sequence Source Affymetrix Proprietary Database