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[181541_at]

Description W02D7.6 /REP_DB=WormBase Gene ID /WP=CE14446 /TR=O17527 /GB=AAB63936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 79      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 624.1
(3)
P 		402.2
(-3)
P 		475.6
(-1)
P 		603.3
(2.4)
P 		222
B 475.4
(-1)
P 		480.5
(-0.8)
P 		408.3
(-3)
P 		606
(3)
P 		198
C 614.6
(3)
P 		321.2
(-3)
P 		501.3
(0.7)
P 		561.6
(1.9)
P 		293
avr 571.4
(2.4) 		401.3
(-3) 		461.7
(-1.1) 		590.3
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 399.7
(-2.6)
P 		518.5
(1)
P 		386.8
(-3)
P 		444.5
(-1.3)
P 		542.8
(1.7)
P 		585.9
(3)
P 		199
B 504.2
(-0.3)
P 		635.6
(2.2)
P 		424.5
(-1.9)
P 		367.2
(-3)
P 		534.4
(0.3)
P 		675.1
(3)
P 		308
C 468.5
(-0.8)
P 		560.4
(1.9)
P 		431.7
(-1.8)
P 		390.4
(-3)
P 		478.3
(-0.5)
P 		599.2
(3)
P 		209
avr 457.5
(-1.4) 		571.5
(1.7) 		414.3
(-2.6) 		400.7
(-3) 		518.5
(0.2) 		620.1
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 227.2
(3)
P 		87.3
(-3)
P 		124.3
(-1.4)
P 		88.3
(-3)
P 		140
B 151.6
(3)
P 		118.7
(-0.5)
P 		94.6
(-3)
P 		129.1
(0.6)
P 		57
C 203.5
(3)
P 		92.4
(-3)
P 		174.7
(1.4)
P 		94.7
(-2.9)
P 		111
avr 194.1
(3) 		99.5
(-3) 		131.2
(-1) 		104
(-2.7) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 73.7
(-3)
P 		184.4
(3)
P 		84.2
(-2.4)
P 		112.7
(-0.9)
P 		163.8
(1.9)
P 		142.6
(0.7)
P 		111
B 175.4
(0)
P 		211.6
(1.4)
P 		103.1
(-2.8)
P 		97.3
(-3)
P 		217.1
(1.7)
P 		251.7
(3)
P 		154
C 173.7
(1.7)
P 		171
(1.5)
P 		109.9
(-1.5)
P 		78.5
(-3)
P 		154.8
(0.7)
P 		200.6
(3)
P 		122
avr 140.9
(-0.4) 		189
(2.5) 		99.1
(-2.8) 		96.2
(-3) 		178.6
(1.8) 		198.3
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12483
Sequence Type Exemplar sequence
Representative Public ID W02D7.6 NCBI
Target Description W02D7.6 /REP_DB=WormBase Gene ID /WP=CE14446 /TR=O17527 /GB=AAB63936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072743 NCBI Caenorhabditis elegans W02D7.6 (W02D7.6) mRNA, complete cds. 11/11 None
SNAP00000029334 ENSEMBL cdna:SNAP chromosome:CEL140:V:8302462:8303887:-1 11/11 None
GENEFINDER00000029349 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8302462:8304002:-1 11/11 None
W02D7.6 ENSEMBL cdna:known chromosome:CEL140:V:8302355:8303919:-1 gene:W02D7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8302462-8303888(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.6
Entrez Gene 179212 Entrez gene
SwissProt O17527 EMBL-EBI
WormBase CE31082 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505144 W02D7.6 [Caenorhabditis elegans] gb|AAB63936.2| Hypothetical protein W02D7.6 [Caenorhabditis elegans] 0.0
blast NP_505144 W02D7.6 [Caenorhabditis elegans] gb|AAB63936.2| Hypothetical protein W02D7.6 [Caenorhabditis elegans] 1.0E-168
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 8.0E-53
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 2.0E-41
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:181541_AT
gaacgactggatgtgttgcgtgcccagtagaatactgtcaatatttgtttcaaacccgag
caaatttagccgaacatttcacagagcaccattaccttgggagccagctggaaaagcatt
catttgcatcagaggcagaattccagacttggctacaagaaaaagacgaacaaacatgca
cagcgtggaagaaacgatcgagtcgagatattggcggtcgaattgttatgtatcgtttat
gcagacacgagggattattcaagtcatccggaacaacaagtactaatggaaaaccctgtc
cagcttttttaaatgtcctaactaacgaacttacgggaaaagttgacgtgattggatatt
atgagcactttggtcaccacaaagatcatcgttaccgatttttgaatgaccaagaaactg
ccattattttcgaactcgcggatgctggctactctaaccccgaaattgtcaaagaatgca
tgaagtacggtgaaactagtcgcttgagcttcctttcatgtcaagatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGACTGGATGTGTTGCGTGCCC 32 347 452 Antisense
GCCGAACATTTCACAGAGCACCATT 485 283 520 Antisense
ACCATTACCTTGGGAGCCAGCTGGA 267 87 539 Antisense
CCTGTCCAGCTTTTTTAAATGTCCT 29 267 746 Antisense
ATTATGAGCACTTTGGTCACCACAA 492 11 809 Antisense
GTCACCACAAAGATCATCGTTACCG 14 467 824 Antisense
AAACTGCCATTATTTTCGAACTCGC 92 121 866 Antisense
ATTTTCGAACTCGCGGATGCTGGCT 194 15 877 Antisense
GCTACTCTAACCCCGAAATTGTCAA 642 301 899 Antisense
GAAACTAGTCGCTTGAGCTTCCTTT 698 355 943 Antisense
GAGCTTCCTTTCATGTCAAGATCTG 150 387 957 Antisense
Sequence Source Affymetrix Proprietary Database