[Home] | [Total List]

[181540_s_at]

Description F56A3.1 /REP_DB=WormBase Gene ID /WP=CE28460 /TR=P91352 /GB=AAB37805.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 28      6grp_total > 96      4grp_total > 43      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 88.7
(0.8)
P 		112.4
(3)
A 		46.6
(-3)
A 		49
(-2.8)
A 		66
B 42.4
(-3)
P 		80.4
(3)
P 		66.5
(0.8)
P 		63
(0.3)
P 		38
C 69.3
(0.1)
P 		95.1
(3)
P 		41
(-3)
P 		79
(1.2)
P 		54
avr 66.8
(-0.9) 		96
(3) 		51.4
(-3) 		63.7
(-1.3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 61.8
(-3)
M 		61
(-3)
P 		98.6
(-0.9)
P 		99.1
(-0.8)
P 		166.2
(3)
P 		158.5
(2.6)
P 		105
B 78.3
(-1.8)
P 		64.3
(-3)
P 		92.2
(-0.6)
P 		94.6
(-0.4)
P 		79.3
(-1.7)
P 		134.1
(3)
P 		70
C 71.9
(-2.6)
P 		67.4
(-3)
P 		79.3
(-2)
P 		83.8
(-1.7)
P 		142
(3)
P 		140.2
(2.9)
P 		75
avr 70.7
(-2.5) 		64.2
(-3) 		90
(-1.1) 		92.5
(-0.9) 		129.2
(1.9) 		144.3
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 32.3
(3)
P 		24.4
(1.1)
A 		12.2
(-1.8)
A 		7.2
(-3)
A 		25
B 13.5
(-2.9)
P 		19.9
(3)
P 		15.4
(-1.2)
P 		13.4
(-3)
P 		7
C 22.9
(1.1)
P 		27.3
(3)
P 		14.3
(-2.6)
P 		13.3
(-3)
P 		14
avr 22.9
(2.5) 		23.9
(3) 		14
(-1.7) 		11.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.4
(-3)
M 		21.7
(-1.4)
P 		21.5
(-1.4)
P 		25.1
(-0.9)
P 		50.1
(3)
P 		38.6
(1.2)
P 		39
B 27.2
(-1.8)
P 		21.4
(-3)
P 		22.4
(-2.8)
P 		25.1
(-2.2)
P 		32.2
(-0.7)
P 		50
(3)
P 		29
C 26.6
(-1)
P 		20.6
(-2.2)
P 		20.2
(-2.3)
P 		16.8
(-3)
P 		45.9
(2.8)
P 		46.9
(3)
P 		30
avr 21.7
(-2.9) 		21.2
(-3) 		21.4
(-3) 		22.3
(-2.7) 		42.7
(2.4) 		45.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181540_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2296
Sequence Type Exemplar sequence
Representative Public ID F56A3.1 NCBI
Target Description F56A3.1 /REP_DB=WormBase Gene ID /WP=CE28460 /TR=P91352 /GB=AAB37805.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059142 NCBI Caenorhabditis elegans F56A3.1 (F56A3.1) mRNA, complete cds. 11/11 None
SNAP00000016712 ENSEMBL cdna:SNAP chromosome:CEL140:I:5190151:5195125:1 11/11 None
GENEFINDER00000016714 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5190151:5195125:1 11/11 None
F56A3.1 ENSEMBL cdna:known chromosome:CEL140:I:5190151:5195181:1 gene:F56A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5190150-5194017(+) 99.81 99.81
Public Domain and Genome References
Gene Title
Ensembl F56A3.1
Entrez Gene 172159 Entrez gene
SwissProt P91352 EMBL-EBI
WormBase CE28460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37805 Hypothetical protein F56A3.1 [Caenorhabditis elegans] ref|NP_491543.1| F56A3.1 [Caenorhabditis elegans] 0.0
blast CAE67365 Hypothetical protein CBG12832 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181540_S_AT
gactactcgatgtacttgtgtcagaattattgaagaaggaactcatccgggaagaaattt
gtggaatattcaaaggatttctacagttttcatcgatagaaaatctccgaaaatcgtaat
tcttcctgtcaaaattcgcgattttattggcttttccgatggtcttccactttccgaact
cacatttatcgcttcaatatctcgtgattctctgttcaattttcgtcgatttggtggagc
ccacttgttaattatcaatgatccattagagaagttgcgaaatgaggatggtcggcttct
tgtagacgacgggaaatttgtacagaataattcgaaaaatgccccaaaaatgggagctgt
ggagagatatgattttaaattcgagccatctcgtcttcgaatcgacgctactcatctacc
aattcaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTACTCGATGTACTTGTGTCAGA 570 373 1482 Antisense
ATTCTTCCTGTCAAAATTCGCGATT 220 11 1600 Antisense
ATTCGCGATTTTATTGGCTTTTCCG 369 9 1615 Antisense
TTCCGAACTCACATTTATCGCTTCA 101 697 1653 Antisense
ATCGCTTCAATATCTCGTGATTCTC 372 37 1669 Antisense
CGTGATTCTCTGTTCAATTTTCGTC 507 245 1684 Antisense
ATTTTCGTCGATTTGGTGGAGCCCA 73 15 1700 Antisense
GGTGGAGCCCACTTGTTAATTATCA 370 499 1714 Antisense
AATGAGGATGGTCGGCTTCTTGTAG 386 165 1762 Antisense
GCCATCTCGTCTTCGAATCGACGCT 488 281 1866 Antisense
GCTACTCATCTACCAATTCAATTTT 380 303 1888 Antisense
Sequence Source Affymetrix Proprietary Database