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[181539_at]

Description F16B4.2 /REP_DB=WormBase Gene ID /WP=CE17012 /TR=O44634 /GB=AAB94233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_high_8_8 > 13      6grp_highest_nonorm > 71      6grp_total > 50      4grp_total > 02      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2443
1 2 3 4 range
A 251
(-2.7)
P 		147.1
(-3)
P 		139.7
(-3)
A 		2538.3
(3)
P 		2399
B 264.8
(-2.6)
P 		174.9
(-2.8)
P 		95.1
(-3)
P 		2472.6
(3)
P 		2378
C 220.2
(-2.7)
P 		122.3
(-2.9)
A 		100.6
(-3)
P 		2508.3
(3)
P 		2408
avr 245.3
(-2.7) 		148.1
(-2.9) 		111.8
(-3) 		2506.4
(3) 		2395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 298.3
(-0.6)
P 		279.5
(-1.1)
P 		430.4
(3)
P 		356.3
(1)
P 		208.2
(-3)
P 		348.5
(0.8)
P 		222
B 268.3
(-1.8)
P 		317.4
(-0.4)
P 		431.4
(3)
P 		322.5
(-0.2)
P 		228.5
(-3)
P 		257.6
(-2.1)
P 		203
C 219.6
(-3)
P 		396.7
(0.2)
P 		367.9
(-0.3)
P 		555
(3)
P 		225.3
(-2.9)
P 		260.8
(-2.3)
P 		335
avr 262.1
(-1.7) 		331.2
(0.5) 		409.9
(3) 		411.3
(3) 		220.7
(-3) 		289
(-0.8) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 91.4
(-1.9)
P 		31.9
(-3)
P 		36.5
(-2.9)
A 		371.6
(3)
P 		340
B 84.5
(-2.3)
P 		43.2
(-2.7)
P 		22
(-3)
P 		526.9
(3)
P 		505
C 72.9
(-2.4)
P 		35.1
(-3)
A 		35.1
(-3)
P 		422.9
(3)
P 		388
avr 82.9
(-2.2) 		36.7
(-2.9) 		31.2
(-3) 		440.5
(3) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 55
(-3)
P 		99.4
(3)
P 		93.7
(2.2)
P 		90.4
(1.8)
P 		62.8
(-1.9)
P 		84.9
(1)
P 		44
B 93.4
(-0.6)
P 		105.7
(3)
P 		104.8
(2.7)
P 		85.4
(-3)
P 		92.8
(-0.8)
P 		96.1
(0.2)
P 		20
C 81.4
(-1.9)
P 		121
(3)
P 		93.6
(-0.4)
P 		111.6
(1.8)
P 		72.9
(-3)
P 		87.3
(-1.2)
P 		48
avr 76.6
(-2.9) 		108.7
(3) 		97.4
(0.9) 		95.8
(0.6) 		76.2
(-3) 		89.4
(-0.6) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15835
Sequence Type Exemplar sequence
Representative Public ID F16B4.2 NCBI
Target Description F16B4.2 /REP_DB=WormBase Gene ID /WP=CE17012 /TR=O44634 /GB=AAB94233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028639(10), NM_001028638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028639 NCBI Caenorhabditis elegans F16B4.2b (F16B4.2) mRNA, complete cds. 10/11 None
NM_001028638 NCBI Caenorhabditis elegans F16B4.2a (F16B4.2) mRNA, complete cds. 11/11 None
SNAP00000004021 ENSEMBL cdna:SNAP chromosome:CEL140:V:1600041:1603745:1 11/11 None
GENEFINDER00000004036 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1599058:1603737:1 11/11 None
F16B4.2a ENSEMBL cdna:known chromosome:CEL140:V:1600867:1603745:1 gene:F16B4.2 11/11 None
F16B4.2b ENSEMBL cdna:known chromosome:CEL140:V:1600871:1603745:1 gene:F16B4.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1600870-1603745(+) 100.0 100.0
Public Domain and Genome References
Ensembl F16B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68896 Hypothetical protein F16B4.2b [Caenorhabditis elegans] ref|NP_001023810.1| F16B4.2b [Caenorhabditis elegans] 0.0
blast AAB94233 Hypothetical protein F16B4.2a [Caenorhabditis elegans] ref|NP_001023809.1| F16B4.2a [Caenorhabditis elegans] 0.0
blast AAT68896 Hypothetical protein F16B4.2b [Caenorhabditis elegans] ref|NP_001023810.1| F16B4.2b [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-8
Sequence
Target Sequence 
>C. ELEGANS:181539_AT
atctcgacgttcaatttcgccagcagactggtccaaaacggaagacgaagattatttgta
gtgggatggaatttttgatgggccaggtgcactttttgcctgttgacgaggtcagagtaa
tcaatgacttgataactaattatgaagaaggacgaatgatgttggctggaaagaaatata
atgtctcaccaagcggtcattatgcagaaatcggggagactgcattctggaagccaactt
tgctgaattgtaatctaggagctcttattgcgggaatcatttggaaaatcaacacagaaa
tggagtgttactgtatccctggtctcgatgttccagagtaccaagaatattgtgccagat
ttgaaggccaaatcaccgaataccgtaacacacgggttcttcatattccggttccggaga
caacccgtaaattatttgtgttgattaataagtgtggtgtagtgattcagaaagcaaaca
ttgatgatgttgtgcacattccaaaggaaaaatgcatactggactggacgtgctcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCGACGTTCAATTTCGCCAGCA 402 33 506 Antisense
TTGATGGGCCAGGTGCACTTTTTGC 52 703 580 Antisense
GCACTTTTTGCCTGTTGACGAGGTC 201 313 594 Antisense
ATGTCTCACCAAGCGGTCATTATGC 449 47 686 Antisense
GGGAGACTGCATTCTGGAAGCCAAC 453 495 719 Antisense
GTAATCTAGGAGCTCTTATTGCGGG 54 463 755 Antisense
TGGAGTGTTACTGTATCCCTGGTCT 390 549 806 Antisense
ATCCCTGGTCTCGATGTTCCAGAGT 20 39 820 Antisense
GAAGGCCAAATCACCGAATACCGTA 532 331 868 Antisense
GTAACACACGGGTTCTTCATATTCC 144 461 890 Antisense
ATACTGGACTGGACGTGCTCAACAT 624 23 1021 Antisense
Sequence Source Affymetrix Proprietary Database