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[181538_at]

Description ZC416.2 /REP_DB=WormBase Gene ID /WP=CE17304 /TR=O44184 /GB=AAB88367.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 133.7
(-3)
A 		158.1
(1.9)
A 		163
(2.9)
A 		163.6
(3)
A 		30
B 75.9
(-3)
A 		125.9
(1.6)
A 		113.1
(0.4)
A 		141.5
(3)
M 		66
C 182.5
(3)
A 		167.1
(2.3)
A 		110.3
(-0.2)
A 		47.1
(-3)
A 		135
avr 130.7
(-0.6) 		150.4
(3) 		128.8
(-0.9) 		117.4
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 164
(1.5)
A 		129.2
(-0.2)
P 		86.2
(-2.4)
A 		193.1
(3)
P 		101.7
(-1.6)
A 		73.7
(-3)
A 		119
B 150
(0.3)
P 		72.9
(-1.6)
A 		13
(-3)
A 		91
(-1.1)
P 		12.4
(-3)
A 		265.3
(3)
A 		253
C 172.2
(3)
A 		99.9
(-1.1)
A 		66.3
(-3)
A 		149.6
(1.7)
A 		95.9
(-1.3)
A 		92.8
(-1.5)
A 		106
avr 162.1
(3) 		100.7
(-0.4) 		55.2
(-3) 		144.6
(2) 		70
(-2.2) 		143.9
(2) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 48.7
(3)
A 		34.3
(-0.5)
A 		42.6
(1.5)
A 		24
(-3)
A 		25
B 24.2
(-3)
A 		31.1
(3)
A 		26.2
(-1.3)
A 		30.1
(2.1)
M 		7
C 60.4
(3)
A 		48
(1.6)
A 		38.4
(0.5)
A 		7.9
(-3)
A 		53
avr 44.4
(3) 		37.8
(1.3) 		35.7
(0.8) 		20.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 30.2
(-0.6)
A 		45.9
(2.4)
P 		18.8
(-2.8)
A 		49
(3)
P 		30.7
(-0.5)
A 		17.9
(-3)
A 		31
B 52.2
(0.1)
P 		24.3
(-1.7)
A 		3.2
(-3)
A 		24.1
(-1.7)
P 		5
(-2.9)
A 		98.9
(3)
A 		96
C 63.8
(3)
A 		30.5
(-1.3)
A 		16.9
(-3)
A 		30.1
(-1.3)
A 		31
(-1.2)
A 		31.1
(-1.2)
A 		47
avr 48.7
(2.9) 		33.6
(0.4) 		13
(-3) 		34.4
(0.5) 		22.2
(-1.5) 		49.3
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10379
Sequence Type Exemplar sequence
Representative Public ID ZC416.2 NCBI
Target Description ZC416.2 /REP_DB=WormBase Gene ID /WP=CE17304 /TR=O44184 /GB=AAB88367.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067987 NCBI Caenorhabditis elegans ZC416.2 (ZC416.2) mRNA, complete cds. 11/11 None
ZC416.2 ENSEMBL cdna:known chromosome:CEL140:IV:3633617:3636044:1 gene:ZC416.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026353 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3633622-3636050(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC416.2
Entrez Gene 191168 Entrez gene
WormBase CE17304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500388 ZC416.2 [Caenorhabditis elegans] gb|AAB88367.1| Hypothetical protein ZC416.2 [Caenorhabditis elegans] 1.0E-41
Sequence
Target Sequence 
>C. ELEGANS:181538_AT
ctgctcaacctcagccgtattatggaaatgccaactatgccccccagggcagcaacccct
acccagctcaaggaccatatccacagggatattacaacccaaatcagccacaagtaataa
caatgttgggggagtttaaaaagattcaaagagcttcagagagtctgagagcaagttttg
actgtctgcagacattttggacgattttgaacaaatttggaatgaacttatacattatgg
ggaagattttgatgatgttgaagaatttggcattgtttgagcaggttgtcgacgactttg
agaaaacttataccgtcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTCAACCTCAGCCGTATTATGG 390 235 38 Antisense
TATGGAAATGCCAACTATGCCCCCC 411 655 58 Antisense
TACCCAGCTCAAGGACCATATCCAC 678 649 97 Antisense
GCTCAAGGACCATATCCACAGGGAT 628 301 103 Antisense
GGGATATTACAACCCAAATCAGCCA 348 495 123 Antisense
AACCCAAATCAGCCACAAGTAATAA 523 145 133 Antisense
GAGAGCAAGTTTTGACTGTCTGCAG 366 395 204 Antisense
CTGTCTGCAGACATTTTGGACGATT 587 235 219 Antisense
GAAGAATTTGGCATTGTTTGAGCAG 16 341 297 Antisense
GTTTGAGCAGGTTGTCGACGACTTT 22 443 312 Antisense
TTGAGAAAACTTATACCGTCTTGAA 140 635 335 Antisense
Sequence Source Affymetrix Proprietary Database