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[181536_at]

Description F52B11.5 /REP_DB=WormBase Gene ID /WP=CE18725 /TR=Q9XUF0 /GB=CAB05194.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 191.7
(-1.1)
P 		163.4
(-2.8)
P 		160.3
(-3)
P 		257.1
(3)
P 		97
B 164
(-3)
P 		172.3
(-2.6)
P 		189.4
(-1.9)
P 		303
(3)
P 		139
C 198.5
(-0.9)
P 		175.7
(-3)
P 		182.7
(-2.4)
P 		240.6
(3)
P 		65
avr 184.7
(-2.1) 		170.5
(-3) 		177.5
(-2.6) 		266.9
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 180.9
(-1.5)
P 		199.8
(-1.1)
P 		374.4
(3)
P 		261
(0.3)
P 		145.7
(-2.4)
P 		119
(-3)
P 		255
B 307.7
(1.2)
P 		286.4
(0.7)
P 		392.9
(3)
P 		217.6
(-0.7)
P 		182.1
(-1.5)
P 		109.5
(-3)
P 		283
C 243.5
(1.9)
P 		275.4
(3)
P 		204
(0.6)
P 		258.4
(2.4)
P 		191.5
(0.2)
P 		98.2
(-3)
P 		177
avr 244
(0.8) 		253.9
(1) 		323.8
(3) 		245.7
(0.8) 		173.1
(-1.2) 		108.9
(-3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 69.8
(3)
P 		35.5
(-3)
P 		41.9
(-1.9)
P 		37.6
(-2.6)
P 		34
B 52.3
(-0.3)
P 		42.5
(-3)
P 		43.9
(-2.6)
P 		64.6
(3)
P 		22
C 65.7
(3)
P 		50.5
(-0.6)
P 		63.7
(2.5)
P 		40.6
(-3)
P 		25
avr 62.6
(3) 		42.8
(-3) 		49.8
(-0.9) 		47.6
(-1.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 33.4
(-2.5)
P 		71.1
(1.8)
P 		81.5
(3)
P 		66.2
(1.3)
P 		44
(-1.3)
P 		29
(-3)
P 		53
B 107.1
(3)
P 		95.3
(1.9)
P 		95.4
(1.9)
P 		57.6
(-1.5)
P 		74
(0)
P 		40.8
(-3)
P 		66
C 90.3
(3)
P 		84
(2.3)
P 		51.9
(-1)
P 		52
(-1)
P 		62
(0)
P 		32.9
(-3)
P 		57
avr 76.9
(2.2) 		83.5
(3) 		76.3
(2.1) 		58.6
(-0) 		60
(0.1) 		34.2
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9155
Sequence Type Exemplar sequence
Representative Public ID F52B11.5 NCBI
Target Description F52B11.5 /REP_DB=WormBase Gene ID /WP=CE18725 /TR=Q9XUF0 /GB=CAB05194.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070300 NCBI Caenorhabditis elegans F52B11.5 (F52B11.5) mRNA, complete cds. 11/11 None
SNAP00000035583 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14102106:14103033:-1 10/11 None
GENEFINDER00000035586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14102106:14103116:-1 11/11 None
F52B11.5 ENSEMBL cdna:known chromosome:CEL140:IV:14102064:14103122:-1 gene:F52B11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14102111-14103122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52B11.5
Entrez Gene 178366 Entrez gene
SwissProt Q9XUF0 EMBL-EBI
WormBase CE18725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05194 Hypothetical protein F52B11.5 [Caenorhabditis elegans] ref|NP_502701.1| F52B11.5 [Caenorhabditis elegans] 1.0E-88
blast CAB05194 Hypothetical protein F52B11.5 [Caenorhabditis elegans] ref|NP_502701.1| F52B11.5 [Caenorhabditis elegans] 2.0E-81
blast CAE71777 Hypothetical protein CBG18774 [Caenorhabditis briggsae] 5.0E-32
blast CAE71777 Hypothetical protein CBG18774 [Caenorhabditis briggsae] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:181536_AT
tgacgtgatggctacagtttccgacggtgttcacaatgacgtcactctgaaaaatgagca
tgacgtggcaaatgatgtcatgaggtatttggaagaaaactatgtgaagaaggaaaacaa
tgtgaaattggaggagattcagattttattgctctcctacacaaatccaccgcaactccc
acgtggtctttcttgttccaaatggataatcaaatgtgaatcccatacaccttacgttgt
taatttattgaatgcagtgccattaaattgtgacctattgcatattgaagtggataacgt
gggacttggtgaagtggcagatatggaacaagtaattactgcaaaggatttgacactgag
aacttctggaagtgaagatggaatttccagtgaacaaattgcaaagtttcaggccaggag
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTGATGGCTACAGTTTCCGAC 59 571 45 Antisense
GTTTCCGACGGTGTTCACAATGACG 428 449 61 Antisense
GATTCAGATTTTATTGCTCTCCTAC 460 431 180 Antisense
TTATTGCTCTCCTACACAAATCCAC 265 679 190 Antisense
CACGTGGTCTTTCTTGTTCCAAATG 702 197 224 Antisense
GAATCCCATACACCTTACGTTGTTA 461 327 262 Antisense
GCAGTGCCATTAAATTGTGACCTAT 640 311 298 Antisense
GTGACCTATTGCATATTGAAGTGGA 211 481 314 Antisense
GTGGATAACGTGGGACTTGGTGAAG 330 485 334 Antisense
GATTTGACACTGAGAACTTCTGGAA 686 427 391 Antisense
AATTGCAAAGTTTCAGGCCAGGAGG 456 177 441 Antisense
Sequence Source Affymetrix Proprietary Database