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[181535_at]

Description Y87G2A.1 /REP_DB=WormBase Gene ID /WP=CE24681 /TR=Q9U1Q6 /GB=CAB60426.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 19      6grp_total > 69      4grp_total > 20      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 191.9
(-3)
P 		286.1
(3)
A 		198.4
(-2.6)
P 		286.8
(3)
A 		95
B 366.7
(3)
P 		242.4
(-2.8)
P 		262.9
(-1.8)
A 		237.5
(-3)
P 		129
C 205.1
(-2.9)
P 		234
(-1.6)
A 		202.6
(-3)
P 		335.4
(3)
P 		133
avr 254.6
(0.1) 		254.2
(0) 		221.3
(-3) 		286.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 302.5
(-0.8)
P 		286.3
(-1.1)
P 		213.5
(-2.8)
M 		204.6
(-3)
P 		298.7
(-0.9)
P 		469
(3)
P 		264
B 269.6
(0.7)
P 		251.5
(0.1)
P 		297.9
(1.8)
P 		169.8
(-3)
P 		300.4
(1.9)
P 		330
(3)
P 		160
C 342.2
(2.5)
P 		338
(2.3)
P 		239.3
(-2)
P 		217.1
(-3)
P 		296.8
(0.5)
P 		354.8
(3)
P 		138
avr 304.8
(0.4) 		291.9
(0) 		250.2
(-1.3) 		197.2
(-3) 		298.6
(0.2) 		384.6
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 69.9
(3)
P 		62.1
(1.3)
A 		51.9
(-0.9)
P 		42
(-3)
A 		28
B 116.9
(3)
P 		59.9
(-2.2)
P 		60.9
(-2.1)
A 		50.6
(-3)
P 		66
C 67.9
(1.8)
P 		67.3
(1.6)
A 		70.6
(3)
P 		56.6
(-3)
P 		14
avr 84.9
(3) 		63.1
(-0.7) 		61.1
(-1.1) 		49.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 55.8
(-2.2)
P 		101.8
(1.9)
P 		46.5
(-3)
M 		51.9
(-2.5)
P 		90.1
(0.9)
P 		114.2
(3)
P 		68
B 93.8
(0.7)
P 		83.7
(-0)
P 		72.3
(-0.9)
P 		45
(-3)
P 		122.1
(2.9)
P 		123.1
(3)
P 		78
C 126.8
(3)
P 		103.1
(1.3)
P 		60.9
(-1.8)
P 		43.6
(-3)
P 		96
(0.8)
P 		118.8
(2.4)
P 		83
avr 92.1
(0.8) 		96.2
(1.1) 		59.9
(-1.9) 		46.8
(-3) 		102.7
(1.7) 		118.7
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1760
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.1 NCBI
Target Description Y87G2A.1 /REP_DB=WormBase Gene ID /WP=CE24681 /TR=Q9U1Q6 /GB=CAB60426.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060972 NCBI Caenorhabditis elegans Y87G2A.1 (Y87G2A.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000019604 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13529291:13534256:1 11/11 None
SNAP00000019585 ENSEMBL cdna:SNAP chromosome:CEL140:I:13531568:13537906:1 9/11 None
Y87G2A.1 ENSEMBL cdna:known chromosome:CEL140:I:13522663:13534310:1 gene:Y87G2A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13522599-13534187(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.1
Entrez Gene 173221 Entrez gene
SwissProt Q9U1Q6 EMBL-EBI
WormBase CE24681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60426 Hypothetical protein Y87G2A.1 [Caenorhabditis elegans] ref|NP_493373.1| Y87G2A.1 [Caenorhabditis elegans] 0.0
blast T27457 hypothetical protein Y87G2A.e - Caenorhabditis elegans 0.0
blast T27458 hypothetical protein Y87G2A.f - Caenorhabditis elegans 1.0E-114
blast CAE63543 Hypothetical protein CBG08025 [Caenorhabditis briggsae] 2.0E-74
blast CAB60426 Hypothetical protein Y87G2A.1 [Caenorhabditis elegans] ref|NP_493373.1| Y87G2A.1 [Caenorhabditis elegans] 3.0E-65
blast CAE63543 Hypothetical protein CBG08025 [Caenorhabditis briggsae] 1.0E-47
blast T27458 hypothetical protein Y87G2A.f - Caenorhabditis elegans 7.0E-44
Sequence
Target Sequence 
>C. ELEGANS:181535_AT
tatacacattcaacgcagtctgtaaagttgaagatatgtgtatgtcacttttgaatcgcc
tccaagattgtcaaaatccacgtgtcgccctcggatatcgagagaaaattgcggcgatcg
ttcgtaaatcgacaacggatccgggattgtgtgacgagaaaagtgtagaggaaattgaaa
agtcatgggtacttcagaaaccgattagaggacgtcccaggaagagggtgaagctggaaa
atggacaagaagacggtggaggagatttggatgaagatgatgatgttgtaatggatgatt
atgaagatggagaggagaatggggataagaagataaccgcttcccgcagatccgaatctc
caaaaccagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACACATTCAACGCAGTCTGTAA 331 661 1232 Antisense
TGTATGTCACTTTTGAATCGCCTCC 83 561 1270 Antisense
GAATCGCCTCCAAGATTGTCAAAAT 25 331 1284 Antisense
TGTCGCCCTCGGATATCGAGAGAAA 430 557 1314 Antisense
GAGAAAATTGCGGCGATCGTTCGTA 473 391 1333 Antisense
GTTCGTAAATCGACAACGGATCCGG 135 441 1351 Antisense
ACGGATCCGGGATTGTGTGACGAGA 556 93 1366 Antisense
GTCATGGGTACTTCAGAAACCGATT 392 467 1413 Antisense
GAAACCGATTAGAGGACGTCCCAGG 165 357 1428 Antisense
TAAGAAGATAACCGCTTCCCGCAGA 430 637 1557 Antisense
AGATCCGAATCTCCAAAACCAGCAT 675 63 1579 Antisense
Sequence Source Affymetrix Proprietary Database