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[181534_s_at]

Description F07C4.9 /REP_DB=WormBase Gene ID /WP=CE09208 /TR=P91213 /GB=AAG24034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 42      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 48.3
(-3)
A 		79.5
(1)
A 		95
(3)
A 		89.9
(2.3)
A 		47
B 31
(-1)
A 		86.4
(3)
A 		18.9
(-1.8)
A 		2.6
(-3)
A 		84
C 42.7
(-2.4)
A 		113.5
(3)
M 		35.3
(-3)
A 		76.4
(0.2)
A 		78
avr 40.7
(-3) 		93.1
(3) 		49.7
(-2) 		56.3
(-1.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 12.8
(-0.9)
A 		4.2
(-3)
A 		8.4
(-2)
A 		24.4
(2)
A 		28.5
(3)
A 		4.4
(-3)
A 		24
B 11.2
(-2.1)
A 		37.7
(0.7)
A 		3.7
(-2.8)
A 		60.2
(3)
A 		2.1
(-3)
A 		27.2
(-0.4)
A 		58
C 7
(-2.9)
A 		15.9
(-1.5)
A 		43
(3)
A 		39.2
(2.4)
A 		8.7
(-2.7)
A 		6.6
(-3)
A 		36
avr 10.3
(-3) 		19.3
(-1.3) 		18.4
(-1.4) 		41.3
(3) 		13.1
(-2.5) 		12.7
(-2.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 17.6
(-0.7)
A 		17.3
(-0.9)
A 		24.8
(3)
A 		13.2
(-3)
A 		12
B 9.9
(-0.3)
A 		21.3
(3)
A 		4.4
(-1.9)
A 		0.6
(-3)
A 		21
C 14.1
(-2.5)
A 		32.6
(3)
M 		12.3
(-3)
A 		12.9
(-2.8)
A 		20
avr 13.9
(-1) 		23.7
(3) 		13.8
(-1) 		8.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.4
(-2)
A 		1.5
(-2.7)
A 		1.8
(-2.4)
A 		6.2
(1.1)
A 		8.6
(3)
A 		1.1
(-3)
A 		8
B 3.9
(-1.8)
A 		12.5
(1.6)
A 		0.9
(-3)
A 		15.9
(3)
A 		0.9
(-3)
A 		10.2
(0.7)
A 		15
C 2.6
(-2.7)
A 		4.9
(-1.2)
A 		11
(3)
A 		7.9
(0.9)
A 		2.8
(-2.6)
A 		2.2
(-3)
A 		9
avr 3
(-3) 		6.3
(-0.2) 		4.6
(-1.6) 		10
(3) 		4.1
(-2.1) 		4.5
(-1.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12487
Sequence Type Exemplar sequence
Representative Public ID F07C4.9 NCBI
Target Description F07C4.9 /REP_DB=WormBase Gene ID /WP=CE09208 /TR=P91213 /GB=AAG24034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072576(11), NM_072575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072576 NCBI Caenorhabditis elegans C-type LECtin family member (clec-45) (clec-45) mRNA, complete cds. 11/11 A 
NM_072575 NCBI Caenorhabditis elegans C-type LECtin family member (clec-46) (clec-46) mRNA, complete cds. 11/11 A 
SNAP00000003393 ENSEMBL cdna:SNAP chromosome:CEL140:V:7639871:7640384:-1 11/11 None
SNAP00000003394 ENSEMBL cdna:SNAP chromosome:CEL140:V:7640697:7641214:1 11/11 None
GENEFINDER00000003406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7640697:7641214:1 11/11 None
GENEFINDER00000003409 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7639871:7640384:-1 11/11 None
F07C4.9 ENSEMBL cdna:known chromosome:CEL140:V:7639871:7640384:-1 gene:F07C4.9 11/11 A 
F07C4.2 ENSEMBL cdna:known chromosome:CEL140:V:7640697:7641214:1 gene:F07C4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7639871-7640385(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol clec-45
clec-46
Ensembl F07C4.9
F07C4.2
Entrez Gene 184130 Entrez gene
184132 Entrez gene
SwissProt P91214 EMBL-EBI
P91213 EMBL-EBI
WormBase CE09201 Wormbase
CE09208 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504977 C-type LECtin family member (clec-45) [Caenorhabditis elegans] gb|AAG24036.1| C-type lectin protein 45 [Caenorhabditis elegans] 6.0E-77
blast NP_504976 C-type LECtin family member (clec-46) [Caenorhabditis elegans] gb|AAG24034.1| C-type lectin protein 46 [Caenorhabditis elegans] 1.0E-70
blast NP_504977 C-type LECtin family member (clec-45) [Caenorhabditis elegans] gb|AAG24036.1| C-type lectin protein 45 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504977.1 1 5-27
F07C4.2 1 5-27
SNAP00000003394 1 5-27
GENEFINDER00000003406 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:181534_S_AT
attgttgctccgttgagctactcggatgcctcggcaaaatgcaaatccctcggtgccaag
gtgctcactattcaaaacgctattcagaataatgccgtcttgagcttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTGCTCCGTTGAGCTACTCGG 227 5 124 Antisense
TGCTCCGTTGAGCTACTCGGATGCC 129 577 129 Antisense
TCCGTTGAGCTACTCGGATGCCTCG 381 593 132 Antisense
AGCTACTCGGATGCCTCGGCAAAAT 509 75 139 Antisense
TACTCGGATGCCTCGGCAAAATGCA 685 645 142 Antisense
ATGCCTCGGCAAAATGCAAATCCCT 523 41 149 Antisense
GGTGCCAAGGTGCTCACTATTCAAA 77 503 175 Antisense
AGGTGCTCACTATTCAAAACGCTAT 115 59 182 Antisense
GCTCACTATTCAAAACGCTATTCAG 390 301 186 Antisense
CGCTATTCAGAATAATGCCGTCTTG 479 253 201 Antisense
AGAATAATGCCGTCTTGAGCTTCGC 618 75 209 Antisense
Sequence Source Affymetrix Proprietary Database