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[181533_at]

Description F07C4.9 /REP_DB=WormBase Gene ID /WP=CE09208 /TR=P91213 /GB=AAG24034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 42      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 3.3
(-3)
A 		27.4
(3)
A 		18.1
(0.7)
A 		4.9
(-2.6)
A 		24
B 2.9
(-3)
A 		44.6
(3)
A 		34.9
(1.6)
A 		35.1
(1.6)
A 		42
C 4.5
(-3)
A 		50.7
(3)
A 		12.7
(-1.9)
A 		5.7
(-2.8)
A 		46
avr 3.6
(-3) 		40.9
(3) 		21.9
(-0.1) 		15.2
(-1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 6.6
(-2.4)
A 		30.2
(3)
A 		12.7
(-1)
A 		29.9
(2.9)
A 		3.9
(-3)
A 		3.9
(-3)
A 		26
B 3.2
(-3)
A 		35.4
(1.1)
A 		50.8
(3)
A 		3.1
(-3)
A 		6.4
(-2.6)
A 		2.9
(-3)
A 		48
C 8
(-1.7)
A 		5.8
(-2.6)
A 		8.6
(-1.5)
A 		20.9
(3)
A 		9.9
(-1)
A 		4.6
(-3)
A 		16
avr 5.9
(-2.4) 		23.8
(2.9) 		24
(3) 		18
(1.2) 		6.7
(-2.1) 		3.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-2.4)
A 		6
(3)
A 		4.7
(1.5)
A 		0.7
(-3)
A 		5
B 0.9
(-3)
A 		11
(3)
A 		8.1
(1.3)
A 		7.5
(0.9)
A 		10
C 1.5
(-2.8)
A 		14.6
(3)
A 		4.4
(-1.5)
A 		1
(-3)
A 		14
avr 1.2
(-3) 		10.5
(3) 		5.7
(-0.1) 		3.1
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		10.7
(3)
A 		2.8
(-1.9)
A 		7.6
(1.1)
A 		1.2
(-2.9)
A 		1
(-3)
A 		10
B 1.1
(-2.8)
A 		11.8
(2.7)
A 		12.3
(3)
A 		0.8
(-3)
A 		2.6
(-2.1)
A 		1.1
(-2.8)
A 		12
C 3
(0.2)
A 		1.8
(-2.5)
A 		2.2
(-1.6)
A 		4.2
(3)
A 		3.2
(0.7)
A 		1.6
(-3)
A 		3
avr 1.8
(-2.5) 		8.1
(3) 		5.8
(1) 		4.2
(-0.4) 		2.3
(-2) 		1.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12487
Sequence Type Exemplar sequence
Representative Public ID F07C4.9 NCBI
Target Description F07C4.9 /REP_DB=WormBase Gene ID /WP=CE09208 /TR=P91213 /GB=AAG24034.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072575 NCBI Caenorhabditis elegans C-type LECtin family member (clec-46) (clec-46) mRNA, complete cds. 11/11 A 
SNAP00000003393 ENSEMBL cdna:SNAP chromosome:CEL140:V:7639871:7640384:-1 11/11 None
GENEFINDER00000003409 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7639871:7640384:-1 11/11 None
F07C4.9 ENSEMBL cdna:known chromosome:CEL140:V:7639871:7640384:-1 gene:F07C4.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7639871-7640385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-46
Ensembl F07C4.9
Entrez Gene 184132 Entrez gene
SwissProt P91213 EMBL-EBI
WormBase CE09208 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504976 C-type LECtin family member (clec-46) [Caenorhabditis elegans] gb|AAG24034.1| C-type lectin protein 46 [Caenorhabditis elegans] 1.0E-70
blast NP_504977 C-type LECtin family member (clec-45) [Caenorhabditis elegans] gb|AAG24036.1| C-type lectin protein 45 [Caenorhabditis elegans] 1.0E-54
blast CAB05809 Hypothetical protein T09F5.9 [Caenorhabditis elegans] ref|NP_506744.1| C-type LECtin family member (clec-47) [Caenorhabditis elegans] 8.0E-27
Sequence
Target Sequence 
>C. ELEGANS:181533_AT
ttctgctaccagctgcatctatggattgcccaactggattcacaagtatagcgacaactg
gtcaatgtctgaaaattattgttgctccgttgagctactcggatgcctcggcaaaatgca
aatccctcggtgccaaggtgctcactattcaaaacgctattcagaataatgccgtcttga
gcttcgccactgcttcgacgactggaaacgataaggattactggcttgggctccaatgcg
cagcagcttcctcggttcttgcacttgggatgacgggagcaagccagccaaacaatcgct
atggaacttgtgtttttgttggaaaccgcagtcaaactgccggtcagtgggtcagtgccg
agtgtggcttggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCTACCAGCTGCATCTATGGA 186 693 47 Antisense
GCATCTATGGATTGCCCAACTGGAT 166 309 61 Antisense
CCACTGCTTCGACGACTGGAAACGA 43 273 233 Antisense
TAAGGATTACTGGCTTGGGCTCCAA 375 635 258 Antisense
TCCTCGGTTCTTGCACTTGGGATGA 24 591 295 Antisense
TGGGATGACGGGAGCAAGCCAGCCA 601 553 312 Antisense
GCAAGCCAGCCAAACAATCGCTATG 197 321 325 Antisense
ATCGCTATGGAACTTGTGTTTTTGT 526 37 341 Antisense
GAAACCGCAGTCAAACTGCCGGTCA 696 357 368 Antisense
AAACTGCCGGTCAGTGGGTCAGTGC 145 127 380 Antisense
GGTCAGTGCCGAGTGTGGCTTGGTG 25 503 396 Antisense
Sequence Source Affymetrix Proprietary Database