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[181531_s_at]

Description F18A11.5 /REP_DB=WormBase Gene ID /WP=CE20690 /TR=Q9XWL7 /GB=CAA21638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 51      6grp_total > 22      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 731.6
(3)
P 		354.1
(-3)
P 		391.7
(-2.4)
P 		505.1
(-0.6)
P 		378
B 759.9
(3)
P 		422.4
(-2.2)
P 		369.4
(-3)
P 		478.4
(-1.3)
P 		391
C 761.9
(3)
P 		436.8
(-2.5)
P 		408.3
(-3)
P 		526.1
(-1)
P 		354
avr 751.1
(3) 		404.4
(-2.8) 		389.8
(-3) 		503.2
(-1.1) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 609.9
(1.8)
P 		623.7
(1.9)
P 		711.4
(3)
P 		535.1
(0.9)
P 		377.2
(-1)
P 		215.5
(-3)
P 		496
B 623.6
(2.1)
P 		678.5
(3)
P 		630.2
(2.2)
P 		475.1
(-0.3)
P 		432.5
(-1)
P 		310.9
(-3)
P 		368
C 520.2
(0.7)
P 		663.5
(3)
P 		562.9
(1.4)
P 		521.2
(0.7)
P 		337.9
(-2.3)
P 		297.5
(-3)
P 		366
avr 584.6
(1.9) 		655.2
(3) 		634.8
(2.7) 		510.5
(0.7) 		382.5
(-1.3) 		274.6
(-3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 266.4
(3)
P 		76.9
(-2.9)
P 		102.4
(-2.1)
P 		73.9
(-3)
P 		193
B 242.3
(3)
P 		104.3
(-2.3)
P 		85.6
(-3)
P 		101.9
(-2.4)
P 		157
C 252.2
(3)
P 		125.6
(-1.6)
P 		142.3
(-1)
P 		88.7
(-3)
P 		164
avr 253.6
(3) 		102.3
(-2.5) 		110.1
(-2.2) 		88.2
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 112.4
(-0.9)
P 		221.8
(3)
P 		154.9
(0.6)
P 		135.7
(-0.1)
P 		113.8
(-0.8)
P 		52.5
(-3)
P 		169
B 217
(2.5)
P 		225.8
(3)
P 		153
(-1)
P 		125.8
(-2.5)
P 		175.7
(0.3)
P 		115.9
(-3)
P 		110
C 192.8
(2.4)
P 		202.5
(3)
P 		143.3
(-0.5)
P 		104.8
(-2.7)
P 		109.4
(-2.4)
P 		99.6
(-3)
P 		103
avr 174.1
(1) 		216.7
(3) 		150.4
(-0.1) 		122.1
(-1.5) 		133
(-0.9) 		89.3
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181531_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2812
Sequence Type Exemplar sequence
Representative Public ID F18A11.5 NCBI
Target Description F18A11.5 /REP_DB=WormBase Gene ID /WP=CE20690 /TR=Q9XWL7 /GB=CAA21638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064367 NCBI Caenorhabditis elegans F18A11.5 (F18A11.5) mRNA, complete cds. 11/11 A 
SNAP00000020287 ENSEMBL cdna:SNAP chromosome:CEL140:II:13008737:13012377:-1 11/11 None
F18A11.5 ENSEMBL cdna:known chromosome:CEL140:II:13008737:13012426:-1 gene:F18A11.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020302 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13008733-13012374(-) 99.73 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A11.5
Entrez Gene 174943 Entrez gene
SwissProt Q9XWL7 EMBL-EBI
WormBase CE20690 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21638 Hypothetical protein F18A11.5 [Caenorhabditis elegans] ref|NP_496768.1| F18A11.5 [Caenorhabditis elegans] 0.0
blast CAE59431 Hypothetical protein CBG02803 [Caenorhabditis briggsae] 1.0E-127
blast AAF14550 FH protein interacting protein FIP2 [Arabidopsis thaliana] ref|NP_200311.1| potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein [Arabidopsis thaliana] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 2.4E-6
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-26
Sequence
Target Sequence 
>C. ELEGANS:181531_S_AT
tccaagatccaaaatgctcctaccttttcgacatcaactacactgcgtgggaaccgatgc
gacatcacatgtataatatgacgggagaagtcacccagttgatgggcgaaaactgctgca
ttgttgcctgggacaatggtcaacagattcatttgccaaagtctgcgctcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAGATCCAAAATGCTCCTACCT 440 587 509 Antisense
TCCTACCTTTTCGACATCAACTACA 339 591 526 Antisense
TCGACATCAACTACACTGCGTGGGA 111 601 536 Antisense
ACTGCGTGGGAACCGATGCGACATC 335 99 550 Antisense
GAACCGATGCGACATCACATGTATA 586 345 559 Antisense
GACGGGAGAAGTCACCCAGTTGATG 614 375 588 Antisense
GTTGATGGGCGAAAACTGCTGCATT 434 437 606 Antisense
AAAACTGCTGCATTGTTGCCTGGGA 277 131 617 Antisense
GTTGCCTGGGACAATGGTCAACAGA 181 441 631 Antisense
ATGGTCAACAGATTCATTTGCCAAA 189 51 644 Antisense
TCATTTGCCAAAGTCTGCGCTCAGT 236 619 657 Antisense
Sequence Source Affymetrix Proprietary Database