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[181530_at]

Description F18A11.5 /REP_DB=WormBase Gene ID /WP=CE20690 /TR=Q9XWL7 /GB=CAA21638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 18.1
(1.9)
A 		4.7
(-3)
A 		9
(-1.4)
A 		21.2
(3)
A 		17
B 16.9
(3)
A 		12.4
(-3)
A 		12.5
(-2.9)
A 		16.2
(2.1)
A 		5
C 35
(3)
A 		4.9
(-3)
A 		7.6
(-2.5)
A 		25.3
(1.1)
A 		30
avr 23.3
(3) 		7.3
(-3) 		9.7
(-2.1) 		20.9
(2.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 7.5
(-3)
A 		29.4
(3)
A 		14.5
(-1.1)
A 		12.1
(-1.7)
A 		11.4
(-1.9)
A 		11.6
(-1.9)
A 		22
B 10.9
(-1.6)
A 		28.9
(3)
A 		8.9
(-2.1)
A 		7.9
(-2.3)
A 		9.6
(-1.9)
A 		5.2
(-3)
A 		24
C 24.7
(-1.5)
A 		27.8
(-1.3)
A 		12.2
(-2.6)
A 		76.1
(3)
A 		10.7
(-2.8)
A 		8
(-3)
A 		68
avr 14.4
(-1.5) 		28.7
(2.2) 		11.9
(-2.1) 		32
(3) 		10.6
(-2.4) 		8.3
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.6
(3)
A 		1
(-3)
A 		2.4
(-1.5)
A 		3.1
(-0.8)
A 		6
B 5.4
(3)
A 		3.1
(-2.5)
A 		2.9
(-3)
A 		3.5
(-1.6)
A 		3
C 11.6
(3)
A 		1.4
(-3)
A 		2.7
(-2.2)
A 		4.3
(-1.3)
A 		10
avr 7.9
(3) 		1.8
(-3) 		2.7
(-2.1) 		3.6
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10.4
(3)
A 		3.2
(-1.8)
A 		3.1
(-1.9)
A 		3.5
(-1.6)
A 		2.8
(-2.1)
A 		9
B 3.8
(-1.5)
A 		9.6
(3)
A 		2.2
(-2.8)
A 		2.1
(-2.8)
A 		3.9
(-1.4)
A 		1.9
(-3)
A 		8
C 9.1
(0)
A 		8.5
(-0.2)
A 		3.1
(-2.8)
A 		15.3
(3)
A 		3.4
(-2.7)
A 		2.7
(-3)
A 		13
avr 4.8
(-1) 		9.5
(3) 		2.8
(-2.7) 		6.8
(0.7) 		3.6
(-2.1) 		2.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2812
Sequence Type Exemplar sequence
Representative Public ID F18A11.5 NCBI
Target Description F18A11.5 /REP_DB=WormBase Gene ID /WP=CE20690 /TR=Q9XWL7 /GB=CAA21638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064367 NCBI Caenorhabditis elegans F18A11.5 (F18A11.5) mRNA, complete cds. 11/11 A 
SNAP00000020287 ENSEMBL cdna:SNAP chromosome:CEL140:II:13008737:13012377:-1 11/11 None
GENEFINDER00000020302 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13008737:13012377:-1 10/11 None
F18A11.5 ENSEMBL cdna:known chromosome:CEL140:II:13008737:13012426:-1 gene:F18A11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13008733-13012374(-) 99.73 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A11.5
Entrez Gene 174943 Entrez gene
SwissProt Q9XWL7 EMBL-EBI
WormBase CE20690 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21638 Hypothetical protein F18A11.5 [Caenorhabditis elegans] ref|NP_496768.1| F18A11.5 [Caenorhabditis elegans] 0.0
blast CAE59431 Hypothetical protein CBG02803 [Caenorhabditis briggsae] 1.0E-127
blast CAE59431 Hypothetical protein CBG02803 [Caenorhabditis briggsae] 1.0E-110
blast AAF14550 FH protein interacting protein FIP2 [Arabidopsis thaliana] ref|NP_200311.1| potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein [Arabidopsis thaliana] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 2.4E-6
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-26
Pfam IPR001232 EMBL-EBI SKP1 component 2.4E-6
Sequence
Target Sequence 
>C. ELEGANS:181530_AT
tctgcgctcagtacatcatgtcatcaaaagagctctatagactcaaaactttcgacgatc
actatttcgaaatgtccaccgaatcaatcggagatcctctcccagatggcaagccaagtc
caacagggaaaagcttccaactatgtgataccagttccgaacgtcaaaggaattaccatg
aagatggttgtcacctggtgcatccgtcatcgagtcgaagttccgagcacttctacgtgg
gaagttgactatgttaaatcattggatcgagaggaactgaaagatgcgatatgggccgcc
aagtatcttcgaatgccaattcttattaatattactagttctgaactgtttttgcgagcc
gaaaatacaccggtagagaggttagatgaagtgtatccgatgccgcactgtgtaggcaga
gctccggagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCGCTCAGTACATCATGTCATC 467 607 670 Antisense
AGACTCAAAACTTTCGACGATCACT 669 69 708 Antisense
CAATCGGAGATCCTCTCCCAGATGG 507 181 754 Antisense
CTATGTGATACCAGTTCCGAACGTC 431 211 810 Antisense
GATGGTTGTCACCTGGTGCATCCGT 79 407 852 Antisense
GTGCATCCGTCATCGAGTCGAAGTT 107 481 867 Antisense
AGTTCCGAGCACTTCTACGTGGGAA 523 63 888 Antisense
GGGCCGCCAAGTATCTTCGAATGCC 91 491 962 Antisense
GTTCTGAACTGTTTTTGCGAGCCGA 379 443 1007 Antisense
GTATCCGATGCCGCACTGTGTAGGC 503 455 1062 Antisense
CTGTGTAGGCAGAGCTCCGGAGAGA 652 239 1077 Antisense
Sequence Source Affymetrix Proprietary Database