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[181529_at]

Description Y39A1A.8 /REP_DB=WormBase Gene ID /WP=CE28118 /TR=Q9XX26 /GB=CAA21014.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 100.1
(-3)
A 		111.2
(-2.7)
A 		149.5
(-1.5)
A 		293.6
(3)
P 		194
B 121.2
(-2.9)
A 		117.4
(-3)
A 		146
(-2.2)
A 		325.8
(3)
P 		208
C 103.8
(-3)
A 		167
(-1.3)
A 		155.7
(-1.6)
A 		333.5
(3)
P 		230
avr 108.4
(-3) 		131.9
(-2.3) 		150.4
(-1.8) 		317.6
(3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 164.5
(-0.5)
A 		93.9
(-3)
A 		145.6
(-1.2)
M 		137.3
(-1.5)
A 		185.4
(0.2)
P 		263
(3)
P 		169
B 161.1
(-0.9)
P 		125.1
(-3)
A 		192.7
(1)
A 		155.9
(-1.2)
M 		180.8
(0.3)
P 		227.4
(3)
P 		102
C 150.7
(-1.9)
P 		121.2
(-3)
A 		134.5
(-2.5)
A 		164
(-1.4)
P 		159.4
(-1.5)
P 		277.1
(3)
P 		156
avr 158.8
(-1.1) 		113.4
(-3) 		157.6
(-1.1) 		152.4
(-1.4) 		175.2
(-0.4) 		255.8
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 36.5
(0.9)
A 		24.1
(-3)
A 		39.1
(1.8)
A 		43
(3)
P 		19
B 38.7
(-1.6)
A 		29
(-3)
A 		33.8
(-2.3)
A 		69.4
(3)
P 		40
C 34.4
(-3)
A 		48
(0.7)
A 		54.3
(2.5)
A 		56.2
(3)
P 		22
avr 36.5
(-2.3) 		33.7
(-3) 		42.4
(-0.7) 		56.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 30.3
(-3)
A 		33.4
(-2.4)
A 		31.7
(-2.8)
M 		34.8
(-2.2)
A 		55.9
(1.6)
P 		64
(3)
P 		34
B 56.1
(-1)
P 		41.6
(-3)
A 		46.8
(-2.2)
A 		41.3
(-3)
M 		73.4
(1.4)
P 		84.8
(3)
P 		44
C 55.9
(-0.7)
P 		37
(-2.6)
A 		34.2
(-2.9)
A 		33
(-3)
P 		51.6
(-1.1)
P 		92.8
(3)
P 		60
avr 47.4
(-1.5) 		37.3
(-2.9) 		37.6
(-2.8) 		36.4
(-3) 		60.3
(0.3) 		80.5
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7340
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.8 NCBI
Target Description Y39A1A.8 /REP_DB=WormBase Gene ID /WP=CE28118 /TR=Q9XX26 /GB=CAA21014.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066942(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066942 NCBI Caenorhabditis elegans Y39A1A.8 (Y39A1A.8) mRNA, complete cds. 10/11 None
Y39A1A.8 ENSEMBL cdna:known chromosome:CEL140:III:10626026:10628303:-1 gene:Y39A1A.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012910 7/11 Cross Hyb Matching Probes None
GENEFINDER00000012931 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10625954-10628299(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.8
Entrez Gene 189708 Entrez gene
SwissProt Q9XX26 EMBL-EBI
WormBase CE33218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16632_AT nodulin MtN3 family protein at
ATH1-121501:245982_AT nodulin MtN3 family protein at
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21014 Hypothetical protein Y39A1A.8 [Caenorhabditis elegans] ref|NP_499343.2| Y39A1A.8 [Caenorhabditis elegans] 1.0E-128
blast CAE71435 Hypothetical protein CBG18346 [Caenorhabditis briggsae] 9.0E-99
blast CAE67903 Hypothetical protein CBG13500 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 2.0E-35
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 4.8E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499343.2 7 10-32,45-64,69-91,98-120,130-148,161-183,187-209
Y39A1A.8 7 10-32,45-64,69-91,98-120,130-148,161-183,187-209
Sequence
Target Sequence 
>C. ELEGANS:181529_AT
cggaatcggctgttttcttcaggcgtgttatcttatgtacttttactacatgacaagaaa
tcggcgtttcctgaataaagtgatcagtattgaacttggaatcatcggaatcgtcgtcta
ttgggtggctcattcaacaaatagtcatctcacaaaaacgacatatgtcggcaattattg
catttttctgaatatttgcagtgtggcggcgccgttattcgatattggaaaggtggtccg
taacaaatccagtgaatctcttccgttgccgttatgtgtcgcgtgtttcgtcgtgtgtct
tcaatggatgttttatggatatatcgttgacgatattgtgatattggtaattgggtgcca
aacgtcatcgcaacggtcatctcgattctgcaactttcactatttatcatttatccgggt
gctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAATCGGCTGTTTTCTTCAGGCG 356 241 237 Antisense
GGCGTGTTATCTTATGTACTTTTAC 381 541 258 Antisense
GAATCATCGGAATCGTCGTCTATTG 527 327 335 Antisense
TCGTCTATTGGGTGGCTCATTCAAC 131 603 350 Antisense
CAGTGTGGCGGCGCCGTTATTCGAT 472 205 435 Antisense
CAAATCCAGTGAATCTCTTCCGTTG 457 193 480 Antisense
GTTTCGTCGTGTGTCTTCAATGGAT 380 449 521 Antisense
ATTGGGTGCCAAACGTCATCGCAAC 235 5 586 Antisense
GTCATCGCAACGGTCATCTCGATTC 538 467 600 Antisense
CATCTCGATTCTGCAACTTTCACTA 276 213 614 Antisense
ATTTATCATTTATCCGGGTGCTCCG 405 15 638 Antisense
Sequence Source Affymetrix Proprietary Database