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[181527_at]

Description C15H9.8 /REP_DB=WormBase Gene ID /WP=CE04000 /TR=Q18028 /GB=AAB52665.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 63      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 0      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 490.5
(-3)
P 		526.1
(-2)
P 		677
(2.3)
P 		702.4
(3)
P 		212
B 521.3
(-2.1)
P 		502.6
(-3)
P 		560.2
(-0.3)
P 		629.7
(3)
P 		127
C 569.8
(-2.5)
P 		551.7
(-3)
P 		611.9
(-1.2)
P 		751.3
(3)
P 		200
avr 527.2
(-3) 		526.8
(-3) 		616.4
(0.2) 		694.5
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 293.8
(-2.5)
P 		440.2
(1)
P 		442.2
(1.1)
P 		522.8
(3)
P 		274.5
(-3)
P 		470.3
(1.7)
P 		248
B 309.4
(-3)
P 		358.8
(-1.2)
P 		471.3
(3)
P 		377.4
(-0.5)
P 		355.8
(-1.3)
P 		377.4
(-0.5)
P 		162
C 378.1
(-1.1)
P 		404.3
(-0.2)
P 		494.9
(3)
P 		441.5
(1.1)
P 		324
(-3)
P 		382.5
(-0.9)
P 		171
avr 327.1
(-2.6) 		401.1
(0.3) 		469.5
(3) 		447.2
(2.1) 		318.1
(-3) 		410.1
(0.6) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 178.6
(3)
P 		114.2
(-2.1)
P 		177
(2.9)
P 		102.8
(-3)
P 		76
B 166.2
(3)
P 		124.1
(-3)
P 		129.8
(-2.2)
P 		134.2
(-1.6)
P 		42
C 188.6
(1.3)
P 		158.6
(-0.8)
P 		213.3
(3)
P 		126.7
(-3)
P 		87
avr 177.8
(3) 		132.3
(-1.8) 		173.4
(2.5) 		121.2
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 54.2
(-3)
P 		156.6
(3)
P 		96.3
(-0.5)
P 		132.6
(1.6)
P 		82.8
(-1.3)
P 		114.5
(0.5)
P 		102
B 107.6
(-2)
P 		119.4
(-0.4)
P 		114.5
(-1)
P 		100
(-3)
P 		144.6
(3)
P 		140.7
(2.5)
P 		45
C 140.1
(3)
P 		123.4
(1)
P 		126
(1.4)
P 		88.8
(-3)
P 		104.9
(-1.1)
P 		128
(1.6)
P 		51
avr 100.6
(-3) 		133.1
(3) 		112.3
(-0.8) 		107.1
(-1.8) 		110.8
(-1.1) 		127.7
(2) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16792
Sequence Type Exemplar sequence
Representative Public ID C15H9.8 NCBI
Target Description C15H9.8 /REP_DB=WormBase Gene ID /WP=CE04000 /TR=Q18028 /GB=AAB52665.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076624 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-3) (prx-3) mRNA, complete cds. 11/11 None
SNAP00000042804 ENSEMBL cdna:SNAP chromosome:CEL140:X:6110961:6112874:-1 11/11 None
GENEFINDER00000042810 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6110961:6112874:-1 11/11 None
C15H9.8 ENSEMBL cdna:known chromosome:CEL140:X:6112191:6112874:-1 gene:C15H9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6112190-6112874(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol prx-3
Ensembl C15H9.8
Entrez Gene 182644 Entrez gene
SwissProt Q18028 EMBL-EBI
WormBase CE04000 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7031 peroxisome organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5779 integral to peroxisomal membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE68871 Hypothetical protein CBG14834 [Caenorhabditis briggsae] 1.0E-164
blast AAB52669 Hypothetical protein C15H9.10 [Caenorhabditis elegans] ref|NP_509024.1| C15H9.10 [Caenorhabditis elegans] 1.0E-108
blast AAB52665 Peroxisome assembly factor protein 3 [Caenorhabditis elegans] ref|NP_509025.1| PeRoXisome assembly factor family member (prx-3) [Caenorhabditis elegans] 2.0E-63
blast AAB52665 Peroxisome assembly factor protein 3 [Caenorhabditis elegans] ref|NP_509025.1| PeRoXisome assembly factor family member (prx-3) [Caenorhabditis elegans] 3.0E-56
blast CAE68871 Hypothetical protein CBG14834 [Caenorhabditis briggsae] 2.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR006966 EMBL-EBI Peroxin-3 2.9E-56
Pfam IPR006966 EMBL-EBI Peroxin-3 3.4E-56
Sequence
Target Sequence 
>C. ELEGANS:181527_AT
tgttggcatctgcatgggagtttgcaaaaagaaataaaggaaaaattattgccggaggag
tactggttggaagtgcaattgcctatgttcagtcatcgtccagaccgaagacgttggaaa
aagtttccacttcttcagaattaccgaatcaggctcgcagacattacatatttgactcaa
cacatcgatcatgtgatcaatctatcaccgacctgattccttcaattgtgactcaaattc
aagccagatttgatgttgaaagcattcaagaaaaattacaaaatactcctgatcttactg
ctgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGGCATCTGCATGGGAGTTTGC 549 563 14 Antisense
ATTGCCGGAGGAGTACTGGTTGGAA 371 5 61 Antisense
AGTGCAATTGCCTATGTTCAGTCAT 681 59 85 Antisense
TTCAGTCATCGTCCAGACCGAAGAC 246 687 101 Antisense
GTTTCCACTTCTTCAGAATTACCGA 299 451 136 Antisense
GAATTACCGAATCAGGCTCGCAGAC 521 323 151 Antisense
GGCTCGCAGACATTACATATTTGAC 7 541 165 Antisense
ATTTGACTCAACACATCGATCATGT 102 19 183 Antisense
GATCAATCTATCACCGACCTGATTC 567 419 208 Antisense
GACCTGATTCCTTCAATTGTGACTC 446 383 223 Antisense
AATACTCCTGATCTTACTGCTGAAC 242 173 295 Antisense
Sequence Source Affymetrix Proprietary Database