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[181526_at]

Description Y43F8A.2 /REP_DB=WormBase Gene ID /WP=CE24284 /TR=Q9U2G6 /GB=CAA21643.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.9
(-3)
A 		8.8
(-3)
A 		13.4
(-0.9)
A 		21.8
(3)
A 		13
B 10.3
(3)
A 		9
(-0.7)
A 		9
(-0.7)
A 		8.2
(-3)
A 		2
C 7.6
(-3)
A 		12.8
(-1.5)
A 		9.3
(-2.5)
A 		28.4
(3)
A 		21
avr 8.9
(-3) 		10.2
(-2.3) 		10.6
(-2) 		19.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 11.7
(-2.8)
A 		7.5
(-3)
A 		5.9
(-3)
A 		11.2
(-2.9)
A 		121.8
(0.2)
A 		226.2
(3)
A 		220
B 5.7
(-3)
A 		4.7
(-3)
A 		4.6
(-3)
A 		9.5
(-2.9)
A 		115.3
(0.3)
A 		205.6
(3)
A 		201
C 3.8
(-3)
A 		14
(-2.7)
A 		7.7
(-2.9)
A 		16.4
(-2.6)
A 		73.7
(-0.8)
A 		191.5
(3)
P 		188
avr 7.1
(-3) 		8.7
(-2.9) 		6.1
(-3) 		12.4
(-2.8) 		103.6
(-0.1) 		207.8
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.3
(2.3)
A 		1.9
(-3)
A 		3.5
(3)
A 		3.2
(1.9)
A 		2
B 3.3
(3)
A 		2.2
(-1.4)
A 		2.1
(-1.8)
A 		1.8
(-3)
A 		2
C 2.5
(-3)
A 		3.7
(0.1)
A 		3.2
(-1.2)
A 		4.8
(3)
A 		2
avr 3
(0.4) 		2.6
(-3) 		2.9
(-0.4) 		3.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		2.7
(-2.8)
A 		1.3
(-3)
A 		2.8
(-2.8)
A 		36.8
(1)
A 		55.1
(3)
A 		54
B 2
(-2.9)
A 		1.6
(-3)
A 		1.1
(-3)
A 		2.5
(-2.9)
A 		46.9
(0.6)
A 		76.7
(3)
A 		76
C 1.4
(-3)
A 		4.3
(-2.7)
A 		2
(-2.9)
A 		3.3
(-2.8)
A 		23.9
(-0.8)
A 		64.1
(3)
P 		63
avr 1.9
(-3) 		2.9
(-2.9) 		1.5
(-3) 		2.9
(-2.9) 		35.9
(0.2) 		65.3
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12724
Sequence Type Exemplar sequence
Representative Public ID Y43F8A.2 NCBI
Target Description Y43F8A.2 /REP_DB=WormBase Gene ID /WP=CE24284 /TR=Q9U2G6 /GB=CAA21643.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075369 NCBI Caenorhabditis elegans Y43F8A.2 (Y43F8A.2) mRNA, complete cds. 11/11 None
SNAP00000034968 ENSEMBL cdna:SNAP chromosome:CEL140:V:19377567:19382581:1 11/11 None
GENEFINDER00000034973 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19374803:19378765:1 11/11 None
Y43F8A.2 ENSEMBL cdna:known chromosome:CEL140:V:19374141:19378788:1 gene:Y43F8A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19375206-19378765(+) 99.07 99.07
Public Domain and Genome References
Gene Title
Ensembl Y43F8A.2
Entrez Gene 180269 Entrez gene
SwissProt Q9U2G6 EMBL-EBI
WormBase CE24284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21643 Hypothetical protein Y43F8A.2 [Caenorhabditis elegans] ref|NP_507770.1| Y43F8A.2 [Caenorhabditis elegans] 0.0
blast CAA21641 Hypothetical protein Y43F8A.3 [Caenorhabditis elegans] ref|NP_507771.2| Y43F8A.3 [Caenorhabditis elegans] 1.0E-151
blast CAE61687 Hypothetical protein CBG05633 [Caenorhabditis briggsae] 1.0E-119
blast CAE73031 Hypothetical protein CBG20400 [Caenorhabditis briggsae] 1.0E-113
blast CAA21643 Hypothetical protein Y43F8A.2 [Caenorhabditis elegans] ref|NP_507770.1| Y43F8A.2 [Caenorhabditis elegans] 1.0E-109
blast NP_495393 F31E8.5 [Caenorhabditis elegans] gb|AAA98022.2| Hypothetical protein F31E8.5 [Caenorhabditis elegans] 4.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034968 3 199-221,317-339,435-457
Sequence
Target Sequence 
>C. ELEGANS:181526_AT
cgaacgtgctgtatcgatttccgctctgagttatgagatttttgaggcgaatacacaggc
caatgagacgacaagagagtacgagtttacggtgtcaaattgtgaatggatccgcatctg
ggcctccgacaaaaccatgaaagagtacgcaactgctatgaaagtcgacgagacccttga
cgttttcctttctgcgggatactacgttccaccggattcggatcaagctttgccacttcc
agactatcatttgattgataagctcaagttgacagtgatgaaagatcctgctgttgcggg
agacaatcatgagctgatcgaattcgcatttggcagtgtcaacaacgcctacctgttccg
ccgtcatttcaagtcgaaagcttttggagtcaaaaatctcaacatccacgtcattaggtc
agaaaaatgtgaagctaacattgcagtgaagccctcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAACGTGCTGTATCGATTTCCGCT 143 253 978 Antisense
TTGTGAATGGATCCGCATCTGGGCC 246 709 1077 Antisense
TCTGGGCCTCCGACAAAACCATGAA 685 607 1094 Antisense
GAAAGTCGACGAGACCCTTGACGTT 656 359 1137 Antisense
GTTTTCCTTTCTGCGGGATACTACG 354 447 1159 Antisense
ATACTACGTTCCACCGGATTCGGAT 18 3 1176 Antisense
CGGATTCGGATCAAGCTTTGCCACT 592 243 1190 Antisense
TTGCCACTTCCAGACTATCATTTGA 179 701 1207 Antisense
TTGGCAGTGTCAACAACGCCTACCT 28 707 1307 Antisense
AAATCTCAACATCCACGTCATTAGG 270 117 1371 Antisense
CTAACATTGCAGTGAAGCCCTCCTT 277 209 1412 Antisense
Sequence Source Affymetrix Proprietary Database