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[181525_at]

Description F09E5.7 /REP_DB=WormBase Gene ID /WP=CE02614 /TR=Q19257 /GB=AAA79347.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 64      6grp_total > 60      4grp_total > 51      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 675.2
(-0.4)
P 		799.4
(3)
P 		696.9
(0.2)
P 		583.3
(-3)
P 		216
B 715.4
(-1.4)
P 		712.7
(-1.5)
P 		785.3
(3)
P 		689.3
(-3)
P 		96
C 673.3
(1)
P 		720.3
(3)
P 		654
(0.2)
P 		577.9
(-3)
P 		142
avr 688
(0.4) 		744.1
(3) 		712.1
(1.5) 		616.8
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 707.6
(-2)
P 		916
(1.3)
P 		749.5
(-1.4)
P 		1021.4
(3)
P 		646.5
(-3)
P 		851.1
(0.3)
P 		375
B 661.8
(-2.1)
P 		773.8
(-0.2)
P 		962.9
(3)
P 		768.7
(-0.3)
P 		611.3
(-3)
P 		715.1
(-1.2)
P 		352
C 734.3
(-2.4)
P 		714.9
(-2.8)
P 		1023.7
(3)
P 		953.8
(1.7)
P 		702.9
(-3)
P 		795.3
(-1.3)
P 		321
avr 701.2
(-1.9) 		801.6
(0.4) 		912
(2.9) 		914.6
(3) 		653.6
(-3) 		787.2
(0.1) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 245.8
(3)
P 		173.5
(0.3)
P 		182.2
(0.6)
P 		85.4
(-3)
P 		160
B 228.1
(3)
P 		176
(-0.8)
P 		182
(-0.4)
P 		146.9
(-3)
P 		81
C 222.9
(2.8)
P 		207.1
(2)
P 		227.9
(3)
P 		97.4
(-3)
P 		131
avr 232.3
(3) 		185.5
(0.7) 		197.4
(1.3) 		109.9
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 130.4
(-3)
P 		325.8
(3)
P 		163.2
(-2)
P 		259.1
(1)
P 		195.1
(-1)
P 		207.2
(-0.6)
P 		195
B 230.3
(-0.5)
P 		257.6
(2.1)
P 		233.8
(-0.1)
P 		203.6
(-3)
P 		248.4
(1.3)
P 		266.6
(3)
P 		63
C 272.2
(3)
P 		218.1
(-1)
P 		260.6
(2.1)
P 		191.8
(-3)
P 		227.4
(-0.3)
P 		266.2
(2.6)
P 		80
avr 211
(-3) 		267.2
(3) 		219.2
(-2.1) 		218.2
(-2.2) 		223.6
(-1.7) 		246.7
(0.8) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5800
Sequence Type Exemplar sequence
Representative Public ID F09E5.7 NCBI
Target Description F09E5.7 /REP_DB=WormBase Gene ID /WP=CE02614 /TR=Q19257 /GB=AAA79347.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062601 NCBI Caenorhabditis elegans F09E5.7 (F09E5.7) mRNA, complete cds. 11/11 None
SNAP00000044011 ENSEMBL cdna:SNAP chromosome:CEL140:II:5352079:5353187:1 11/11 None
GENEFINDER00000044038 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5352079:5353187:1 11/11 None
F09E5.7.1 ENSEMBL cdna:known chromosome:CEL140:II:5352055:5353646:1 gene:F09E5.7 11/11 None
F09E5.7.2 ENSEMBL cdna:known chromosome:CEL140:II:5352069:5353187:1 gene:F09E5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5352076-5353185(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E5.7
Entrez Gene 173907 Entrez gene
SwissProt Q19257 EMBL-EBI
WormBase CE02614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79347 Hypothetical protein F09E5.7 [Caenorhabditis elegans] ref|NP_495002.1| F09E5.7 [Caenorhabditis elegans] 1.0E-149
blast CAE59082 Hypothetical protein CBG02374 [Caenorhabditis briggsae] 3.0E-97
Sequence
Target Sequence 
>C. ELEGANS:181525_AT
ttggatcagctcttactctcaatcatattttgatgctcggctctctgcgtgacaaaattc
tgaaaaacttgacacccaagagtgttgcaaaactcattttatcgaacaagaaatctcagc
aaattcttacatctgatgcggtcgataacacattctggaagaaacgtttaaacaatgatt
ttggaaatgaaactgtacaaaatacgatcaccaccggccgaaaattctatggaatgtatt
gccagaaagcaaatgagtcgagaactacagcgagaagaaatgaaccagttcgtaatgaaa
atccgcttatgatcggtggaccacgtcatcctcctagacatcctgttcatgacccttacg
ggaatcgttttcctgatccggatactgaatactacaatcccctcggaggtttcttgccac
caggtgtaccacgcgccggaaatccaaacattccagacctgttccgtggacctgatcatc
cggatctcaatccactgggcccattaggacagccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGATCAGCTCTTACTCTCAATCA 97 709 338 Antisense
TCATATTTTGATGCTCGGCTCTCTG 160 621 360 Antisense
CGGCTCTCTGCGTGACAAAATTCTG 223 243 375 Antisense
ATCACCACCGGCCGAAAATTCTATG 310 23 544 Antisense
ATGATCGGTGGACCACGTCATCCTC 275 47 646 Antisense
TACAATCCCCTCGGAGGTTTCTTGC 662 641 730 Antisense
TTTCTTGCCACCAGGTGTACCACGC 24 673 747 Antisense
ACCACGCGCCGGAAATCCAAACATT 281 85 765 Antisense
GTTCCGTGGACCTGATCATCCGGAT 616 441 798 Antisense
TCATCCGGATCTCAATCCACTGGGC 557 617 813 Antisense
ACTGGGCCCATTAGGACAGCCACGT 369 97 831 Antisense
Sequence Source Affymetrix Proprietary Database