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[181523_s_at]

Description F18A1.7 /REP_DB=WormBase Gene ID /WP=CE04407 /TR=Q19536 /GB=AAB63403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_total > 98      4grp_total > 16      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 123
(-3)
P 		237.7
(-0.6)
P 		249.5
(-0.4)
P 		414.7
(3)
P 		292
B 124.2
(-3)
P 		203.1
(-1.8)
P 		249.1
(-1.1)
P 		522.8
(3)
P 		399
C 164.6
(-3)
P 		199.9
(-2.2)
P 		239
(-1.3)
P 		424.9
(3)
P 		260
avr 137.3
(-3) 		213.6
(-1.6) 		245.9
(-0.9) 		454.1
(3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3886
1 2 3 4 5 6 range
A 228.5
(-2.9)
A 		177.1
(-3)
P 		246.8
(-2.9)
P 		590.5
(-2.3)
P 		2660.5
(1)
P 		3902.8
(3)
P 		3726
B 165.8
(-3)
P 		168.5
(-3)
P 		252.5
(-2.9)
P 		613.6
(-2.3)
P 		2626.7
(0.9)
P 		3908.1
(3)
P 		3742
C 160.4
(-3)
P 		159.9
(-3)
P 		260.2
(-2.8)
P 		623.8
(-2.3)
P 		2584.6
(0.7)
P 		4045.8
(3)
P 		3886
avr 184.9
(-3) 		168.5
(-3) 		253.2
(-2.9) 		609.3
(-2.3) 		2623.9
(0.9) 		3952.2
(3) 		3784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 44.8
(-3)
P 		51.6
(-1)
P 		65.2
(3)
P 		60.7
(1.7)
P 		20
B 39.6
(-3)
P 		50.2
(-2.1)
P 		57.7
(-1.5)
P 		111.4
(3)
P 		72
C 54.5
(-3)
P 		57.5
(-2.4)
P 		83.3
(3)
P 		71.6
(0.6)
P 		29
avr 46.3
(-3) 		53.1
(-1.8) 		68.7
(0.9) 		81.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1415
1 2 3 4 5 6 range
A 42.1
(-3)
A 		63
(-2.9)
P 		53.8
(-2.9)
P 		149.8
(-2.3)
P 		802.8
(2)
P 		950.2
(3)
P 		908
B 57.7
(-3)
P 		56.1
(-3)
P 		61.3
(-3)
P 		162.5
(-2.5)
P 		1067.2
(1.3)
P 		1457.3
(3)
P 		1401
C 59.5
(-3)
P 		48.8
(-3)
P 		66.2
(-2.9)
P 		125.5
(-2.6)
P 		836.3
(0.6)
P 		1354.4
(3)
P 		1306
avr 53.1
(-3) 		56
(-3) 		60.4
(-3) 		145.9
(-2.5) 		902.1
(1.2) 		1254
(3) 		1201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181523_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4315
Sequence Type Exemplar sequence
Representative Public ID F18A1.7 NCBI
Target Description F18A1.7 /REP_DB=WormBase Gene ID /WP=CE04407 /TR=Q19536 /GB=AAB63403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063204 NCBI Caenorhabditis elegans F18A1.7 (F18A1.7) mRNA, complete cds. 11/11 A 
SNAP00000013711 ENSEMBL cdna:SNAP chromosome:CEL140:II:7662727:7663672:-1 11/11 None
GENEFINDER00000013719 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7662727:7663672:-1 11/11 None
F18A1.7.1 ENSEMBL cdna:known chromosome:CEL140:II:7662688:7663674:-1 gene:F18A1.7 11/11 None
F18A1.7.2 ENSEMBL cdna:known chromosome:CEL140:II:7662688:7663672:-1 gene:F18A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7662723-7664045(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A1.7
Entrez Gene 174237 Entrez gene
SwissProt Q19536 EMBL-EBI
WormBase CE32628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63403 Hypothetical protein F18A1.7 [Caenorhabditis elegans] ref|NP_495605.2| F18A1.7 [Caenorhabditis elegans] 1.0E-145
blast CAA10465 F18A1.7 protein [Caenorhabditis briggsae] emb|CAA10309.1| F18A1.7 protein [Caenorhabditis briggsae] emb|CAE67509.1| Hypothetical protein CBG13025 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:181523_S_AT
ggctgcgacaaagaatgctatgctcgttcaaacctaactgctttcgctcaagattctaac
attaaattcgctgctacagttggaggtaatgtatttattgttgctgatcatcttggagaa
ctttgtaactctctgcaatgtactctcccatgtgtcaccaagcgactcaacagcaagtgt
gccttgagtggatggcttagtctggacatgcttatgcaaccattcgatgccgtttctgta
atggttgatcaattgtcaccagcattgagggatgtcatcagtaagaaaatcgataaaaga
tgccgttttgcaattaacccaactcgtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCGACAAAGAATGCTATGCTC 57 541 499 Antisense
GCTATGCTCGTTCAAACCTAACTGC 387 303 515 Antisense
ACCTAACTGCTTTCGCTCAAGATTC 130 87 530 Antisense
CTAACATTAAATTCGCTGCTACAGT 687 225 554 Antisense
TGTAACTCTCTGCAATGTACTCTCC 573 559 622 Antisense
GTGTCACCAAGCGACTCAACAGCAA 197 487 650 Antisense
AGTGGATGGCTTAGTCTGGACATGC 446 57 685 Antisense
CTGGACATGCTTATGCAACCATTCG 322 241 700 Antisense
ATTCGATGCCGTTTCTGTAATGGTT 119 3 720 Antisense
GTCACCAGCATTGAGGGATGTCATC 537 465 753 Antisense
TTGCAATTAACCCAACTCGTCTCAA 122 703 806 Antisense
Sequence Source Affymetrix Proprietary Database