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[181522_at]

Description D1054.11 /REP_DB=WormBase Gene ID /WP=CE05529 /TR=Q18947 /GB=CAA98439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 49      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 60
(-3)
A 		128
(2.9)
A 		129.1
(3)
A 		100.1
(0.5)
A 		69
B 92.8
(-0.9)
A 		115.8
(1.1)
A 		137
(3)
A 		69.4
(-3)
A 		68
C 109.4
(-0.1)
A 		133.2
(3)
A 		87.4
(-3)
A 		117.3
(0.9)
A 		46
avr 87.4
(-3) 		125.7
(3) 		117.8
(1.8) 		95.6
(-1.7) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2941
1 2 3 4 5 6 range
A 101.9
(-2.8)
A 		47.1
(-3)
A 		33.5
(-3)
A 		107.4
(-2.8)
A 		2371.4
(3)
P 		1775.6
(1.5)
P 		2338
B 95.7
(-2.9)
A 		83
(-2.9)
A 		65.3
(-3)
A 		80.2
(-3)
A 		2011.1
(3)
P 		1684.8
(2)
P 		1946
C 60.2
(-3)
A 		80.8
(-3)
A 		92.9
(-2.9)
A 		109.1
(-2.9)
A 		2974.2
(3)
P 		1719
(0.4)
P 		2914
avr 85.9
(-2.9) 		70.3
(-3) 		63.9
(-3) 		98.9
(-2.9) 		2452.2
(3) 		1726.5
(1.2) 		2388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 21.8
(-0.8)
A 		27.8
(1.1)
A 		33.8
(3)
A 		14.7
(-3)
A 		19
B 29.6
(2.3)
A 		28.6
(1.9)
A 		31.7
(3)
A 		14.8
(-3)
A 		17
C 36.2
(2.3)
A 		38.3
(3)
A 		30.4
(0.4)
A 		19.8
(-3)
A 		19
avr 29.2
(1.9) 		31.6
(2.8) 		32
(3) 		16.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 955
1 2 3 4 5 6 range
A 18.8
(-2.9)
A 		16.7
(-2.9)
A 		7.3
(-3)
A 		27.2
(-2.8)
A 		715.6
(3)
P 		432.3
(0.6)
P 		708
B 33.3
(-2.9)
A 		27.6
(-2.9)
A 		15.9
(-3)
A 		21.2
(-3)
A 		817.1
(3)
P 		628.3
(1.6)
P 		801
C 22.3
(-3)
A 		24.6
(-3)
A 		23.6
(-3)
A 		21.9
(-3)
A 		962.4
(3)
P 		575.5
(0.5)
P 		941
avr 24.8
(-2.9) 		23
(-2.9) 		15.6
(-3) 		23.4
(-2.9) 		831.7
(3) 		545.4
(0.9) 		816
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12799
Sequence Type Exemplar sequence
Representative Public ID D1054.11 NCBI
Target Description D1054.11 /REP_DB=WormBase Gene ID /WP=CE05529 /TR=Q18947 /GB=CAA98439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073358 NCBI Caenorhabditis elegans D1054.11 (D1054.11) mRNA, complete cds. 11/11 None
SNAP00000017224 ENSEMBL cdna:SNAP chromosome:CEL140:V:10796394:10797447:1 11/11 None
GENEFINDER00000017230 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10796394:10797447:1 11/11 None
D1054.11 ENSEMBL cdna:known chromosome:CEL140:V:10796381:10797497:1 gene:D1054.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10796393-10797447(+) 86.37 100.0
Public Domain and Genome References
Gene Title
Ensembl D1054.11
Entrez Gene 179497 Entrez gene
SwissProt Q18947 EMBL-EBI
WormBase CE05529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98439 Hypothetical protein D1054.11 [Caenorhabditis elegans] ref|NP_505759.1| D1054.11 [Caenorhabditis elegans] 1.0E-115
blast CAE64894 Hypothetical protein CBG09707 [Caenorhabditis briggsae] 5.0E-47
Sequence
Target Sequence 
>C. ELEGANS:181522_AT
tttcgctcgtcacaacaaaactcgtgatgtccgttctgccagtgttgtcgctattggaag
caccgccggtgtcactctcgtttgtaatcgcgatgacagaagatatgagggatttgttat
tgatatgaatgcaactacaaacggattctctaagaaaatcgaaatcacgcaactcacttg
tcttggactcgacaaaactattattggtcttcctgtggaacacggagtacaacaactggc
gcaaaagattcaggaaattttggaagatgacttcttcgttccagttattccgtcgagaag
gaagagacaagctggtggagcaactgctaacagcgctgaatccacgactgaagcagctga
caccgaatccacaactgaagccgctgccaccgaaactcctgccgccgaatctaccacaac
tgaagcttccgctactgacgctgccgccaccgaagcttccgctaccgatgccgccgccac
cgaaggtgctgtcaccaaagctgctgccggagttacagaagaatcagctacggaagtgat
cactgtagcaacaacaccagcttcaccagatgcggcgcttaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCTCGTCACAACAAAACTCGT 609 665 339 Antisense
ACAAAACTCGTGATGTCCGTTCTGC 26 113 353 Antisense
TTCTGCCAGTGTTGTCGCTATTGGA 92 693 372 Antisense
CGGTGTCACTCTCGTTTGTAATCGC 152 245 405 Antisense
AATCACGCAACTCACTTGTCTTGGA 405 171 501 Antisense
TCTTCGTTCCAGTTATTCCGTCGAG 644 611 611 Antisense
GCTAACAGCGCTGAATCCACGACTG 227 301 664 Antisense
TGACACCGAATCCACAACTGAAGCC 609 571 696 Antisense
CACAACTGAAGCTTCCGCTACTGAC 259 195 753 Antisense
TGTAGCAACAACACCAGCTTCACCA 583 559 882 Antisense
GCTTCACCAGATGCGGCGCTTAATA 462 305 898 Antisense
Sequence Source Affymetrix Proprietary Database