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[181520_at]

Description W07A12.7 /REP_DB=WormBase Gene ID /WP=CE20163 /TR=Q9XVW1 /GB=CAA92706.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 94      6grp_total > 89      4grp_total > 25      6grp_highest_sub > Cu      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1041
1 2 3 4 range
A 406.5
(-3)
P 		880
(0.1)
P 		877.1
(0.1)
P 		1311.2
(3)
P 		905
B 420.1
(-3)
P 		979.2
(0.3)
P 		922.8
(0)
P 		1422.6
(3)
P 		1003
C 381.6
(-3)
P 		1017.9
(0.8)
P 		810.8
(-0.4)
P 		1387.4
(3)
P 		1006
avr 402.7
(-3) 		959
(0.4) 		870.2
(-0.1) 		1373.7
(3) 		971

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 604.2
(-0.7)
P 		441.9
(-2.3)
P 		445.9
(-2.2)
P 		367.4
(-3)
P 		831.9
(1.6)
P 		979.9
(3)
P 		613
B 597.2
(-1.2)
P 		481
(-2.8)
P 		483.2
(-2.8)
P 		467.4
(-3)
P 		655.5
(-0.4)
P 		899.2
(3)
P 		432
C 577.1
(-1.8)
P 		501.6
(-3)
P 		544.2
(-2.3)
P 		531.8
(-2.5)
P 		764.4
(1.1)
P 		889.5
(3)
P 		388
avr 592.8
(-1.2) 		474.8
(-2.8) 		491.1
(-2.5) 		455.5
(-3) 		750.6
(0.8) 		922.9
(3) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 148
(-3)
P 		191
(0.2)
P 		229.3
(3)
P 		191.9
(0.2)
P 		81
B 134
(-3)
P 		241.8
(0.8)
P 		213.8
(-0.2)
P 		303.2
(3)
P 		169
C 126.3
(-3)
P 		292.6
(3)
P 		282.6
(2.6)
P 		233.9
(0.9)
P 		166
avr 136.1
(-3) 		241.8
(2.9) 		241.9
(2.9) 		243
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 111.4
(-2.3)
P 		157.2
(-0.6)
P 		97.1
(-2.9)
P 		93.2
(-3)
P 		251
(3)
P 		238.6
(2.5)
P 		158
B 207.8
(-0.5)
P 		160.1
(-1.8)
P 		117.3
(-3)
P 		123.8
(-2.8)
P 		266.3
(1.1)
P 		335.3
(3)
P 		218
C 213.9
(0.4)
P 		153.1
(-1.6)
P 		138.5
(-2)
P 		107
(-3)
P 		247.3
(1.4)
P 		297.8
(3)
P 		191
avr 177.7
(-0.7) 		156.8
(-1.4) 		117.6
(-2.7) 		108
(-3) 		254.9
(1.8) 		290.6
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3740
Sequence Type Exemplar sequence
Representative Public ID W07A12.7 NCBI
Target Description W07A12.7 /REP_DB=WormBase Gene ID /WP=CE20163 /TR=Q9XVW1 /GB=CAA92706.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063553 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-323) (tag-323) mRNA, complete cds. 11/11 A 
SNAP00000000169 ENSEMBL cdna:SNAP chromosome:CEL140:II:9161331:9163205:1 11/11 None
GENEFINDER00000000173 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9161462:9163205:1 11/11 None
W07A12.7 ENSEMBL cdna:known chromosome:CEL140:II:9161289:9163347:1 gene:W07A12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9161291-9163202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-323
Ensembl W07A12.7
Entrez Gene 174455 Entrez gene
SwissProt Q9XVW1 EMBL-EBI
WormBase CE20163 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92706 Hypothetical protein W07A12.7 [Caenorhabditis elegans] ref|NP_495954.1| Temporarily Assigned Gene name family member (tag-323) [Caenorhabditis elegans] 0.0
blast CAE57892 Hypothetical protein CBG00938 [Caenorhabditis briggsae] 0.0
blast CAA92707 Hypothetical protein W07A12.6 [Caenorhabditis elegans] ref|NP_495953.2| W07A12.6 [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495954.1 11 54-76,97-119,139-161,185-207,242-264,271-293,336-355,362-379,394-416,437-459,463-485
W07A12.7 11 54-76,97-119,139-161,185-207,242-264,271-293,336-355,362-379,394-416,437-459,463-485
SNAP00000000169 11 42-64,85-107,127-149,173-195,230-252,259-281,324-343,350-367,382-404,425-447,451-473
GENEFINDER00000000173 9 88-110,135-157,192-214,221-243,286-305,312-329,344-366,387-409,413-435
Sequence
Target Sequence 
>C. ELEGANS:181520_AT
attccattcatttcatatccagggcaagacgcagagacattgaagagtatttatgctgga
ctttgggacatgtactcaagaccatataccaagtgtggtccattccttatcggtcttctt
ctcggatacatcacagtttccagcaaatacatcatggtttcgactacatccaagacactc
ttccgttccagtctcattgtcgcaatcgccacaatctacgcaattctcccagaatattgg
aacccaaatgctggaaatactctctataatacagtttacacggcagtattccgatctgta
ttcgctatggctatttctggaatgattgctgctctgtatttcagacaagaataccgtcca
acaaatccgatcttcgccatgcttgccaagctcacctacaacgcgtatctccttcatatg
ccagttgtctatattttcaattggctcccattccttcaagctgccacttcaccaattcat
cttctactagttcttccatttgttgcaattctatcattcattgctgctctcatcttttat
cttttcattgaggccccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCATTCATTTCATATCCAGGGC 444 5 919 Antisense
CAAGTGTGGTCCATTCCTTATCGGT 89 181 1008 Antisense
TTATCGGTCTTCTTCTCGGATACAT 676 679 1025 Antisense
GGTTTCGACTACATCCAAGACACTC 447 503 1074 Antisense
GGAATGATTGCTGCTCTGTATTTCA 349 533 1237 Antisense
CAACAAATCCGATCTTCGCCATGCT 326 189 1277 Antisense
CTCCTTCATATGCCAGTTGTCTATA 445 235 1327 Antisense
TATTTTCAATTGGCTCCCATTCCTT 339 663 1350 Antisense
ATCTTCTACTAGTTCTTCCATTTGT 371 31 1397 Antisense
AATTCTATCATTCATTGCTGCTCTC 341 177 1425 Antisense
TTTTATCTTTTCATTGAGGCCCCAA 537 675 1453 Antisense
Sequence Source Affymetrix Proprietary Database