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[181519_at]

Description F47E1.1 /REP_DB=WormBase Gene ID /WP=CE04600 /TR=Q20539 /GB=AAA81088.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 444.3
(-0)
P 		371.3
(-1)
P 		219.8
(-3)
A 		675
(3)
P 		455
B 394.3
(-0.6)
P 		417.1
(-0.3)
P 		213.1
(-3)
A 		667.8
(3)
P 		455
C 415.9
(0.1)
P 		431
(0.3)
P 		239.8
(-3)
A 		585.4
(3)
P 		346
avr 418.2
(-0.2) 		406.5
(-0.4) 		224.2
(-3) 		642.7
(3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 322.5
(2.6)
P 		322.5
(2.6)
P 		342.3
(3)
P 		167
(-0.6)
A 		90.9
(-2.1)
A 		48.8
(-3)
A 		294
B 308.3
(2.7)
P 		259.3
(1.5)
P 		321.6
(3)
P 		76.3
(-3)
A 		101.5
(-2.4)
A 		107.2
(-2.2)
A 		245
C 319
(3)
P 		290.7
(2.4)
P 		240.4
(1.3)
A 		215.4
(0.8)
A 		36.7
(-3)
A 		105.4
(-1.5)
A 		282
avr 316.6
(3) 		290.8
(2.4) 		301.4
(2.6) 		152.9
(-1.1) 		76.4
(-3) 		87.1
(-2.7) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 161.8
(3)
P 		80.6
(-1.7)
P 		57.5
(-3)
A 		98.8
(-0.6)
P 		104
B 125.7
(1.9)
P 		103
(0.5)
P 		49.4
(-3)
A 		142.3
(3)
P 		93
C 137.7
(3)
P 		123.9
(1.5)
P 		83.6
(-3)
A 		98.7
(-1.3)
P 		54
avr 141.7
(3) 		102.5
(-0) 		63.5
(-3) 		113.3
(0.8) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 59.4
(-0.2)
P 		114.7
(3)
P 		74.5
(0.7)
P 		42.3
(-1.2)
A 		27.4
(-2.1)
A 		11.9
(-3)
A 		103
B 107.3
(3)
P 		86.3
(1.6)
P 		78.1
(1)
P 		20.2
(-3)
A 		41.2
(-1.6)
A 		40
(-1.6)
A 		87
C 118.2
(3)
P 		88.7
(1.3)
P 		61.2
(-0.2)
A 		43.3
(-1.2)
A 		11.9
(-3)
A 		35.3
(-1.7)
A 		106
avr 95
(2.9) 		96.6
(3) 		71.3
(0.8) 		35.3
(-2.3) 		26.8
(-3) 		29.1
(-2.8) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16869
Sequence Type Exemplar sequence
Representative Public ID F47E1.1 NCBI
Target Description F47E1.1 /REP_DB=WormBase Gene ID /WP=CE04600 /TR=Q20539 /GB=AAA81088.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077132 NCBI Caenorhabditis elegans F47E1.1 (F47E1.1) mRNA, complete cds. 11/11 None
SNAP00000035130 ENSEMBL cdna:SNAP chromosome:CEL140:X:9077136:9077550:1 11/11 None
F47E1.1 ENSEMBL cdna:known chromosome:CEL140:X:9073735:9077550:1 gene:F47E1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035132 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9073733-9077549(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47E1.1
Entrez Gene 185935 Entrez gene
SwissProt Q20539 EMBL-EBI
WormBase CE04600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81088 Hypothetical protein F47E1.1 [Caenorhabditis elegans] ref|NP_509533.1| F47E1.1 [Caenorhabditis elegans] 6.0E-78
blast AAA81088 Hypothetical protein F47E1.1 [Caenorhabditis elegans] ref|NP_509533.1| F47E1.1 [Caenorhabditis elegans] 5.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509533.1 1 24-46
F47E1.1 1 24-46
SNAP00000035130 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181519_AT
ccaaaacaatcatcctgcttctctcgttgccaatggcagctgtcatggcatcgaagatct
cctgtttcgttggataccaaggtctggaagttgcagccgaaggtggttttgactactgtc
acacaactctgcgtgtgtcacccccacatattggcacctatgggggataccttcaaagcg
agcgcccattggaggaggacaagacaccatccatcaacggacaatgttatcttcgcccaa
ttggaggaaaaccattcatggagtgtgtctgctaccgaaacctttgcaaccaaccaacgt
cctacgctgattttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAAACAATCATCCTGCTTCTCTC 645 275 71 Antisense
GCTTCTCTCGTTGCCAATGGCAGCT 471 305 87 Antisense
GGCAGCTGTCATGGCATCGAAGATC 311 535 105 Antisense
AGATCTCCTGTTTCGTTGGATACCA 621 65 125 Antisense
GTCACACAACTCTGCGTGTGTCACC 226 465 188 Antisense
GGGATACCTTCAAAGCGAGCGCCCA 484 495 234 Antisense
GGAGGACAAGACACCATCCATCAAC 461 515 264 Antisense
ATGTTATCTTCGCCCAATTGGAGGA 294 47 294 Antisense
ATTCATGGAGTGTGTCTGCTACCGA 350 9 324 Antisense
GTCTGCTACCGAAACCTTTGCAACC 147 471 337 Antisense
AACCAACGTCCTACGCTGATTTTGA 418 147 362 Antisense
Sequence Source Affymetrix Proprietary Database