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[181517_at]

Description R07H5.10 /REP_DB=WormBase Gene ID /WP=CE12568 /TR=Q93300 /GB=CAB03234.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.8
(-2.5)
A 		4.1
(-3)
A 		22.7
(3)
A 		7.9
(-1.8)
A 		19
B 13.7
(3)
A 		3
(-2.8)
A 		2.7
(-3)
A 		10.4
(1.2)
A 		11
C 6.6
(0.2)
A 		6.8
(0.4)
A 		3.1
(-3)
A 		9.6
(3)
A 		7
avr 8.7
(2) 		4.6
(-3) 		9.5
(3) 		9.3
(2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 40
(3)
A 		2.3
(-3)
A 		33
(1.9)
A 		21.3
(0)
A 		8.9
(-1.9)
A 		30.7
(1.5)
A 		38
B 30.2
(3)
A 		3.4
(-3)
A 		3.9
(-2.9)
A 		19.4
(0.6)
A 		6.8
(-2.2)
A 		5.4
(-2.6)
A 		27
C 6.7
(-2.4)
A 		18
(0)
A 		4
(-3)
A 		23.3
(1.2)
A 		31.8
(3)
A 		19.6
(0.4)
A 		28
avr 25.6
(3) 		7.9
(-3) 		13.6
(-1.1) 		21.3
(1.5) 		15.8
(-0.3) 		18.6
(0.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.1
(-1.6)
A 		0.9
(-3)
A 		5.9
(3)
A 		1.2
(-2.6)
A 		5
B 4.4
(3)
A 		0.7
(-2.8)
A 		0.6
(-3)
A 		2.2
(-0.5)
A 		4
C 2.2
(3)
A 		2
(1.9)
A 		1.1
(-3)
A 		1.6
(-0.3)
A 		1
avr 2.9
(3) 		1.2
(-3) 		2.5
(1.6) 		1.7
(-1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.4
(2.9)
A 		0.8
(-3)
A 		7.2
(2.7)
A 		5.4
(1.1)
A 		2.7
(-1.3)
A 		7.5
(3)
A 		7
B 10.5
(3)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		5.1
(-0.4)
A 		2.8
(-1.8)
A 		2
(-2.3)
A 		10
C 2.5
(-2)
A 		5.5
(-0.1)
A 		1
(-3)
A 		4.7
(-0.6)
A 		10.3
(3)
A 		6.6
(0.6)
A 		9
avr 6.8
(3) 		2.5
(-3) 		3
(-2.3) 		5.1
(0.6) 		5.3
(0.9) 		5.4
(1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8397
Sequence Type Exemplar sequence
Representative Public ID R07H5.10 NCBI
Target Description R07H5.10 /REP_DB=WormBase Gene ID /WP=CE12568 /TR=Q93300 /GB=CAB03234.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069704 NCBI Caenorhabditis elegans R07H5.10 (R07H5.10) mRNA, complete cds. 11/11 None
SNAP00000030268 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11213622:11214816:-1 10/11 None
R07H5.10 ENSEMBL cdna:known chromosome:CEL140:IV:11213622:11215316:-1 gene:R07H5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11213627-11215715(-) 89.81 100.0
Public Domain and Genome References
Gene Title
Ensembl R07H5.10
Entrez Gene 187691 Entrez gene
SwissProt Q95QT1 EMBL-EBI
WormBase CE28637 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03234 Hypothetical protein R07H5.10 [Caenorhabditis elegans] emb|CAA92732.2| Hypothetical protein R07H5.10 [Caenorhabditis elegans] ref|NP_502105.1| R07H5.10 [Caenorhabditis elegans] 1.0E-171
blast CAB03234 Hypothetical protein R07H5.10 [Caenorhabditis elegans] emb|CAA92732.2| Hypothetical protein R07H5.10 [Caenorhabditis elegans] ref|NP_502105.1| R07H5.10 [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:181517_AT
atgaatcccgcagctaatcctatgagtagtcaacatcaatatccatatgaccctaacttc
tacccaactgatcaatcatcccatgttccacaccactgcgatcaaagaaatcattatttt
tatggaaacgttaccatcaaagaggagccgtacatgtcaaacgttctgaaccacgacgac
gaccaaactcatatttccgatgaaggctttggggaggaagattctgagatgcatacagga
gcattgccaagcattgatacaccgaagaaagaaagaaaatatgagaaagtatctgaagat
caaaaggatgaaaaatattcttctaaacgggaaaaaaacaacttggcagttaaacgatgc
cgtgagaagaagaagaacgaagaaaaatataagaaggaagcatttgagaacttgattcgc
agtaatttggtcaaggatcaaaaaattgaacaattgaacaatctggttcagtctggaaaa
cagagagaaaatgcgagaatcatggaagtacagagggagaagaacatattgagacagtta
aagaacgagttgactcgtattccaaatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATCCCGCAGCTAATCCTATGA 509 43 400 Antisense
GAGTAGTCAACATCAATATCCATAT 268 399 423 Antisense
TATCCATATGACCCTAACTTCTACC 698 657 439 Antisense
CTAACTTCTACCCAACTGATCAATC 251 227 452 Antisense
AACTGATCAATCATCCCATGTTCCA 319 143 465 Antisense
TTCCACACCACTGCGATCAAAGAAA 212 701 485 Antisense
GGAGCCGTACATGTCAAACGTTCTG 63 523 543 Antisense
TTCTGAACCACGACGACGACCAAAC 352 693 563 Antisense
CGACGACCAAACTCATATTTCCGAT 676 249 576 Antisense
GAGCATTGCCAAGCATTGATACACC 397 389 638 Antisense
GAGTTGACTCGTATTCCAAATGCAC 288 397 946 Antisense
Sequence Source Affymetrix Proprietary Database