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[181515_at]

Description C46F9.2 /REP_DB=WormBase Gene ID /WP=CE08769 /TR=O17191 /GB=AAB70956.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 6.8
(-3)
A 		15.7
(-1.8)
A 		52.9
(3)
P 		15.7
(-1.8)
A 		46
B 4.1
(-3)
A 		21.3
(3)
A 		12.4
(-0.1)
A 		5.2
(-2.6)
A 		17
C 19.8
(3)
A 		8.8
(-1.6)
A 		10
(-1.1)
A 		5.3
(-3)
A 		15
avr 10.2
(-2.5) 		15.3
(-0.6) 		25.1
(3) 		8.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 3.7
(-1.2)
A 		4
(-0.9)
A 		1.4
(-3)
A 		8
(2.2)
A 		9
(3)
A 		6.4
(0.9)
A 		8
B 3.3
(-3)
A 		21.5
(-0.5)
A 		21.5
(-0.5)
A 		47.5
(3)
A 		3.3
(-3)
A 		8.5
(-2.3)
A 		44
C 15.7
(-0.6)
A 		12.6
(-1.2)
A 		8.5
(-2)
A 		35
(3)
A 		5.8
(-2.5)
A 		3.2
(-3)
A 		32
avr 7.6
(-2.6) 		12.7
(-1.3) 		10.5
(-1.9) 		30.2
(3) 		6
(-3) 		6
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(-2.9)
A 		3.4
(-2.4)
A 		13.8
(3)
P 		2.3
(-3)
A 		12
B 1.3
(-2.7)
A 		5.3
(3)
A 		2.9
(-0.4)
A 		1.1
(-3)
A 		4
C 6.6
(3)
A 		2.5
(-1.3)
A 		3.5
(-0.3)
A 		0.9
(-3)
A 		6
avr 3.5
(-0.6) 		3.7
(-0.4) 		6.7
(3) 		1.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-2)
A 		1.4
(-0.3)
A 		0.3
(-3)
A 		2
(1.3)
A 		2.7
(3)
A 		1.6
(0.3)
A 		2
B 1.1
(-3)
A 		7.2
(0.2)
A 		5.2
(-0.9)
A 		12.6
(3)
A 		1.4
(-2.8)
A 		3.2
(-1.9)
A 		12
C 5.8
(1.8)
A 		3.9
(-0.2)
A 		2.2
(-1.9)
A 		7
(3)
A 		1.9
(-2.2)
A 		1.1
(-3)
A 		6
avr 2.5
(-2.4) 		4.2
(-0.5) 		2.6
(-2.3) 		7.2
(3) 		2
(-3) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4330
Sequence Type Exemplar sequence
Representative Public ID C46F9.2 NCBI
Target Description C46F9.2 /REP_DB=WormBase Gene ID /WP=CE08769 /TR=O17191 /GB=AAB70956.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061716 NCBI Caenorhabditis elegans C46F9.2 (C46F9.2) mRNA, complete cds. 11/11 None
SNAP00000005799 ENSEMBL cdna:SNAP chromosome:CEL140:II:1902283:1904448:1 11/11 None
GENEFINDER00000005801 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1902283:1904448:1 11/11 None
C46F9.2 ENSEMBL cdna:known chromosome:CEL140:II:1902283:1904448:1 gene:C46F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1902281-1904447(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46F9.2
Entrez Gene 183514 Entrez gene
SwissProt O17191 EMBL-EBI
WormBase CE08769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 0.0
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 0.0
blast AAB71077 Hypothetical protein ZK250.8 [Caenorhabditis elegans] ref|NP_494139.1| ZK250.8 [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.3E-42
Pfam IPR002083 EMBL-EBI MATH 1.8E-35
Pfam IPR002083 EMBL-EBI MATH 2.9E-54
Sequence
Target Sequence 
>C. ELEGANS:181515_AT
agctacgccggcttggggaagagatacatttattagttggaatggtatggagaaagatta
tataaacaatgacagtatcgatgtggaaatttgtgtgaaaataatcaataacacagatgc
cccacacaatattgcaaacgcggaaagaacattttttctatcccatagtgtcaagaacat
gtcacgtattgaagaaggagaggagtactatacgggcattcaaactcgttttaacattcc
atggaaattgaaaattaagaagcaatcagggttctttggactatttcttcattgtttcaa
acagctagacgaattcagaaaatggtcaattgaaactgaatatcaattgaaagtagtgtc
atccaatgggagaagtgtatcatttagtttttcatatctgtttgataaaccattcggcta
cggatggcttaagctcttgagatgggacaatttggaagaaaaatacatagtgaacgacac
tttagttattgaagctcacgtgaagattctaaatatgactggaattgaggatgaaaccgc
tattgtgaaatcttctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTACGCCGGCTTGGGGAAGAGAT 553 77 708 Antisense
AATCAATAACACAGATGCCCCACAC 157 171 810 Antisense
GCCCCACACAATATTGCAAACGCGG 127 285 826 Antisense
GAACATTTTTTCTATCCCATAGTGT 119 351 854 Antisense
GAGAGGAGTACTATACGGGCATTCA 536 395 905 Antisense
GAAGCAATCAGGGTTCTTTGGACTA 192 341 966 Antisense
CAGGGTTCTTTGGACTATTTCTTCA 33 209 974 Antisense
GTATCATTTAGTTTTTCATATCTGT 336 453 1084 Antisense
GGATGGCTTAAGCTCTTGAGATGGG 524 515 1129 Antisense
CGACACTTTAGTTATTGAAGCTCAC 265 253 1182 Antisense
AAACCGCTATTGTGAAATCTTCTGG 148 125 1241 Antisense
Sequence Source Affymetrix Proprietary Database