[Home] | [Total List]

[181514_s_at]

Description Y39A1A.3 /REP_DB=WormBase Gene ID /WP=CE19121 /TR=Q9XTC1 /GB=CAA21495.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 1044.7
(-3)
P 		1300.7
(0.3)
P 		1055.6
(-2.9)
P 		1509
(3)
P 		464
B 920.7
(-3)
P 		1048.6
(-1.2)
P 		1065.8
(-1)
P 		1356.7
(3)
P 		436
C 1100.6
(2.3)
P 		940.8
(-3)
P 		957
(-2.5)
P 		1121.3
(3)
P 		181
avr 1022
(-3) 		1096.7
(-1.5) 		1026.1
(-2.9) 		1329
(3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 622
1 2 3 4 5 6 range
A 989.1
(0.6)
P 		855.6
(-2.3)
P 		978.9
(0.4)
P 		825.2
(-3)
P 		1041.6
(1.8)
P 		1095.5
(3)
P 		270
B 1401.1
(3)
P 		1052.3
(-0.8)
P 		914.6
(-2.4)
P 		855.6
(-3)
P 		985.7
(-1.6)
P 		1168.2
(0.4)
P 		546
C 1073.8
(2.1)
P 		878.8
(-1.3)
P 		778.7
(-3)
P 		830.8
(-2.1)
P 		946.6
(-0.1)
P 		1124.1
(3)
P 		345
avr 1154.7
(3) 		928.9
(-1.3) 		890.7
(-2) 		837.2
(-3) 		991.3
(-0.1) 		1129.3
(2.5) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 380.4
(3)
P 		282.3
(-0.7)
P 		275.9
(-0.9)
P 		220.9
(-3)
P 		160
B 293.6
(3)
P 		259
(-1.5)
P 		247
(-3)
P 		289.1
(2.4)
P 		47
C 364.3
(3)
P 		270.5
(-0.2)
P 		333.5
(1.9)
P 		189.1
(-3)
P 		175
avr 346.1
(3) 		270.6
(-1) 		285.5
(-0.2) 		233
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 182.3
(-3)
P 		304.3
(2.5)
P 		213.2
(-1.6)
P 		209.3
(-1.8)
P 		314.3
(3)
P 		266.7
(0.8)
P 		132
B 487.5
(3)
P 		350.3
(-0.1)
P 		222.1
(-3)
P 		226.6
(-2.9)
P 		400.5
(1)
P 		435.6
(1.8)
P 		265
C 398
(3)
P 		268.2
(-0.4)
P 		198.2
(-2.2)
P 		167.1
(-3)
P 		306.3
(0.6)
P 		376.3
(2.4)
P 		231
avr 355.9
(2.9) 		307.6
(1) 		211.2
(-2.6) 		201
(-3) 		340.4
(2.3) 		359.5
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181514_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6409
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.3 NCBI
Target Description Y39A1A.3 /REP_DB=WormBase Gene ID /WP=CE19121 /TR=Q9XTC1 /GB=CAA21495.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066933 NCBI Caenorhabditis elegans Y39A1A.3 (Y39A1A.3) mRNA, complete cds. 11/11 None
Y39A1A.3 ENSEMBL cdna:known chromosome:CEL140:III:10595183:10596368:-1 gene:Y39A1A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012940 2/11 Cross Hyb Matching Probes None
SNAP00000012902 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10595230-10596245(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.3
Entrez Gene 176479 Entrez gene
SwissProt Q9XTC1 EMBL-EBI
WormBase CE19121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21495 Hypothetical protein Y39A1A.3 [Caenorhabditis elegans] emb|CAA21033.1| Hypothetical protein Y39A1A.3 [Caenorhabditis elegans] ref|NP_499334.1| Y39A1A.3 [Caenorhabditis elegans] 9.0E-72
blast CAE71442 Hypothetical protein CBG18353 [Caenorhabditis briggsae] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR005355 EMBL-EBI Protein of unknown function UPF0148 6.6E-5
Sequence
Target Sequence 
>C. ELEGANS:181514_S_AT
gatgacgctgcgtcaattcgtctccgagatagctttcgagatgaggtctcgaagcgaatg
ggcgaacttttgttaaagggacagacgatgttggatgagtactgcccgacttgcagtgga
attctcatggaggaccgagctctcgtgcgtcgttgcgtcacctgtgaacttttcagagaa
aaatcgtcggttattgtcggcgaggtttcattgcaagacgaagacctgaatgaagctgtg
aacaacaagatcccaaccccagcggctccagtgaataaaccagcgaaaaaagcagtgctc
cagaaatctgctccagcgaaaaagaaggaagctgttccggctgctgctgagccatcatcg
tctgatacaattgaatcagccaccactgcagtccttcagaagctcgaatgggccaccgat
cggctcaattcaacggaagaagtcgctcgtgtcatggattttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACGCTGCGTCAATTCGTCTCC 483 411 40 Antisense
ATGTTGGATGAGTACTGCCCGACTT 283 47 127 Antisense
AATTCTCATGGAGGACCGAGCTCTC 197 177 159 Antisense
AATCGTCGGTTATTGTCGGCGAGGT 75 169 221 Antisense
TGCTCCAGAAATCTGCTCCAGCGAA 18 583 335 Antisense
AAGAAGGAAGCTGTTCCGGCTGCTG 699 151 361 Antisense
TGCTGAGCCATCATCGTCTGATACA 148 583 384 Antisense
CAATTGAATCAGCCACCACTGCAGT 351 179 407 Antisense
CCACTGCAGTCCTTCAGAAGCTCGA 601 273 422 Antisense
CCACCGATCGGCTCAATTCAACGGA 301 273 452 Antisense
AAGTCGCTCGTGTCATGGATTTTCT 173 155 479 Antisense
Sequence Source Affymetrix Proprietary Database