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[181513_at]

Description W08F4.2 /REP_DB=WormBase Gene ID /WP=CE14714 /TR=O02111 /GB=AAC71169.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 23.4
(-3)
A 		31.3
(-0.5)
A 		42.7
(3)
A 		33.3
(0.1)
A 		19
B 40
(-2.6)
A 		49.5
(-0.9)
A 		70.3
(3)
P 		37.9
(-3)
A 		32
C 33.2
(-1.4)
A 		48.4
(0.8)
P 		22.2
(-3)
A 		63.8
(3)
P 		42
avr 32.2
(-3) 		43.1
(2.1) 		45.1
(3) 		45
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 64.2
(3)
P 		20.1
(-1.7)
A 		44.3
(0.9)
A 		16.7
(-2)
A 		7.4
(-3)
A 		38.6
(0.3)
A 		57
B 11.3
(-2.1)
A 		6
(-3)
A 		30.6
(1.2)
A 		6.3
(-2.9)
A 		41.5
(3)
A 		19
(-0.8)
A 		36
C 8.9
(-3)
A 		54.2
(1.7)
M 		19.5
(-1.9)
A 		67
(3)
M 		33
(-0.5)
A 		27.4
(-1.1)
A 		58
avr 28.1
(-1.3) 		26.8
(-3) 		31.5
(3) 		30
(1.1) 		27.3
(-2.4) 		28.3
(-1.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.5
(0.4)
A 		6.8
(-1.2)
A 		11.2
(3)
A 		4.9
(-3)
A 		6
B 12.8
(0.4)
A 		12.2
(-0)
A 		16.3
(3)
P 		8.1
(-3)
A 		8
C 11
(0.2)
A 		13.9
(3)
P 		7.7
(-3)
A 		10.8
(0)
P 		6
avr 10.8
(1.6) 		11
(1.9) 		11.7
(3) 		7.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.8
(3)
P 		7.2
(0.1)
A 		9.7
(1.7)
A 		4.2
(-1.8)
A 		2.2
(-3)
A 		9.4
(1.5)
A 		10
B 3.9
(-2.1)
A 		2
(-2.9)
A 		7.4
(-0.8)
A 		1.7
(-3)
A 		16.9
(3)
A 		7.1
(-0.9)
A 		15
C 3.3
(-3)
A 		16.5
(3)
M 		5
(-2.2)
A 		13.5
(1.6)
M 		10.7
(0.4)
A 		9.2
(-0.3)
A 		13
avr 6.3
(-3) 		8.6
(0.8) 		7.4
(-1.2) 		6.5
(-2.7) 		9.9
(3) 		8.6
(0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4091
Sequence Type Exemplar sequence
Representative Public ID W08F4.2 NCBI
Target Description W08F4.2 /REP_DB=WormBase Gene ID /WP=CE14714 /TR=O02111 /GB=AAC71169.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061363 NCBI Caenorhabditis elegans W08F4.2 (W08F4.2) mRNA, complete cds. 11/11 None
W08F4.2 ENSEMBL cdna:known chromosome:CEL140:II:587931:590099:1 gene:W08F4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:587930-590099(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.2
Entrez Gene 189298 Entrez gene
SwissProt O02111 EMBL-EBI
WormBase CE14714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71169 Hypothetical protein W08F4.2 [Caenorhabditis elegans] ref|NP_493764.1| W08F4.2 [Caenorhabditis elegans] 0.0
blast T32302 hypothetical protein M151.6 - Caenorhabditis elegans 1.0E-50
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:181513_AT
aattctttgattcatcgttccggtccttggaaattgttaaaggactaaaagtagtcagtc
ttgcaattagctgtaaagacattgaaaattatcaactgtttaaaatgtttccctgcctag
aaaatttggttgttttagatggtccaatttctattcctaacctcactcaaacctttaaaa
gactacaactaactattggaaaagtgacccttgacaatttatttatgcttaattgttcac
agctcttcgtaaactatcgcactttttccaacaaagttctgaacatttttgtaagacaat
gggtaggaggatctaatcccagtcttaaatcaatcactatcagttttccgcacattaata
taaaccgtttcgatgaatgcacactttttaaagaaatcgagtacactcgtattacaaaag
aaatagatcaacccataaaagatagtttcatgattgagagacacgatggaaccatcgcga
acataatgttttatccaacaactcgtttttattttactcttgtcgttggtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTTGATTCATCGTTCCGGTC 339 177 1091 Antisense
TCATCGTTCCGGTCCTTGGAAATTG 324 621 1102 Antisense
GTAGTCAGTCTTGCAATTAGCTGTA 240 457 1141 Antisense
CTGTTTAAAATGTTTCCCTGCCTAG 73 239 1186 Antisense
GGTCCAATTTCTATTCCTAACCTCA 494 483 1231 Antisense
AATTGTTCACAGCTCTTCGTAAACT 429 175 1321 Antisense
GTAAACTATCGCACTTTTTCCAACA 622 461 1339 Antisense
GAGGATCTAATCCCAGTCTTAAATC 368 403 1397 Antisense
TCACTATCAGTTTTCCGCACATTAA 27 627 1424 Antisense
AAACCGTTTCGATGAATGCACACTT 119 127 1452 Antisense
TTTATTTTACTCTTGTCGTTGGTGA 367 673 1598 Antisense
Sequence Source Affymetrix Proprietary Database