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Cluster Members
Consensus/Exemplar

GeneChip Array Information

Probe Set ID

181512_at

GeneChip Array

C. elegans Genome Array

Organism Common Name

Nematode

Probe Design Information

Transcript ID(Array Design)

affy.Ce.6403

Sequence Type

Exemplar sequence

Representative Public ID

Y49E10.2 NCBI

Target Description

Y49E10.2 /REP_DB=WormBase Gene ID /WP=CE22220 /TR=Q9XTU9 /GB=CAB11547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation

Annotation Method Description

Annotation Description

This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).

Annotation Grade

This is a grade A annotation.

Annotation Transcript Cluster (# of Matching Probes)

NM_067209(11)

Transcript Assignments

Representative Transcript	Description	Matching Probes	Related Probesets by Grade
NM_067209 NCBI	Caenorhabditis elegans Y49E10.2 (Y49E10.2) mRNA, complete cds.	11/11	None
SNAP00000016070 ENSEMBL	cdna:SNAP chromosome:CEL140:III:12372512:12373716:-1	11/11	None
GENEFINDER00000016106 ENSEMBL	cdna:GeneFinder chromosome:CEL140:III:12372512:12373931:-1	11/11	None
Y49E10.2 ENSEMBL	cdna:known chromosome:CEL140:III:12372355:12373732:-1 gene:Y49E10.2	11/11	None

Annotation Notes

Cross Hybridizing mRNA	Matched Probes	Nature of Assignment	Related Probesets by Grade
Y37H9A.5	1/11	Cross Hyb Matching Probes	None

Genomic Alignment of Consensus/Exemplar Sequence

Assembly

Wormbase March 2004

Alignment(s)

Position	Identity	Coverage	Cytoband
chrIII:12372507-12373712(-)	100.0	100.0

Public Domain and Genome References

Gene Title

Ensembl

Y49E10.2

Entrez Gene

176662 Entrez gene

SwissProt

Q9XTU9 EMBL-EBI

WormBase

CE22220 Wormbase

Functional Annotations

Ortholog

ID	Title	Organism
ATGENOME1:16302_AT	CAX-interacting protein 1 (CAXIP1)	at
ATH1-121501:251815_AT	CAX-interacting protein 1 (CAXIP1)	at
CANINE:1583774_AT	hypothetical protein LOC612417	cfa
CANINE_2:CFA.11965.1.A1_AT	hypothetical protein LOC612417	cfa
CANINE_2:CFAAFFX.306.1.S1_S_AT	hypothetical protein LOC612417	cfa
DROSOPHILA_2:1629082_AT		dm
DROSGENOME1:145080_AT		dm
CHICKEN:GGAAFFX.12364.1.S1_AT	similar to chromosome 14 open reading frame 87	gga
HU35KSUBB:RC_W80609_AT	chromosome 14 open reading frame 87	hs
U133_X3P:HS.13201.1.S1_3P_A_AT	chromosome 14 open reading frame 87	hs
HG-U133A_2:221932_S_AT	chromosome 14 open reading frame 87	hs
HG-U133_PLUS_2:221932_S_AT	chromosome 14 open reading frame 87	hs
HG-U133A:221932_S_AT	chromosome 14 open reading frame 87	hs
HG-U95C:59721_AT	chromosome 14 open reading frame 87	hs
HG-U95C:65171_AT	chromosome 14 open reading frame 87	hs
MG-U74CV2:169443_AT	RIKEN cDNA 2900070E19 gene	mm
MOE430B:1428553_AT	RIKEN cDNA 2900070E19 gene	mm
MOUSE430_2:1428553_AT	RIKEN cDNA 2900070E19 gene	mm
MU19KSUBA:TC14861_AT	RIKEN cDNA 2900070E19 gene (2900070E19Rik), mRNA	mm
RG-U34C:RC_AI232948_AT	similar to 2900070E19Rik protein (predicted)	rn
RAE230A:1389286_AT	similar to 2900070E19Rik protein (predicted)	rn
RAT230_2:1389286_AT	similar to 2900070E19Rik protein (predicted)	rn
YEAST_2:1778889_AT	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p	Sc

Gene Ontology

GO Biological Process (view graph)
ID	Description	Evidence	Links
6118	electron transport	inferred from electronic annotation	QuickGO AmiGO
GO Molecular Function (view graph)
ID	Description	Evidence	Links
5489	electron transporter activity	inferred from electronic annotation	QuickGO AmiGO

Protein Similarities

Method	ID	Description	E-Value
blast	CAB11547	Hypothetical protein Y49E10.2 [Caenorhabditis elegans] ref\|NP_499610.1\| Y49E10.2 [Caenorhabditis elegans]	4.0E-61
blast	CAB11547	Hypothetical protein Y49E10.2 [Caenorhabditis elegans] ref\|NP_499610.1\| Y49E10.2 [Caenorhabditis elegans]	1.0E-60
blast	CAE66494	Hypothetical protein CBG11774 [Caenorhabditis briggsae]	2.0E-52
blast	CAE66494	Hypothetical protein CBG11774 [Caenorhabditis briggsae]	8.0E-52
blast	AAW41655	conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gb\|EAL22653.1\| hypothetical protein CNBB1030 [Cryptococcus neoformans var. neoformans B-3501A] ref\|XP_568962.1\| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]	3.0E-28

Sequence

Target Sequence

>C. ELEGANS:181512_AT
tgttgcgcgtactatcacgtcaagcgttctcaatggttcgagcagccaacttctcggctt
cagcttcatcagccggtggtggcggacttagcgatgaagttcgcaaacgaatcgacggaa
tcgtgaaaaaagatgatgttgtcgtttttatgaagggaacacaacaggagccagcgtgtg
gattctcgagaaatgttaaattggttctcgacttccacaatgtaaaattccaagactaca
acgttctgaccgatcaggagctaagagaaggtgtcaagattttcagcgaatggccaacaa
ttccacaagtctatgtgaagggagagttcgtcggcggatgtgatattctcatttcaatgc
acaaagacggagagatttccgactttttagacga

BLASTn GenBank NR

Probe Info

Probe Sequence(5'-3')	Probe X	Probe Y	Probe Interrogation Position	Strandedness
TGTTGCGCGTACTATCACGTCAAGC	222	563	14	Antisense
CACGTCAAGCGTTCTCAATGGTTCG	498	199	29	Antisense
CAATGGTTCGAGCAGCCAACTTCTC	293	181	44	Antisense
TCTCGGCTTCAGCTTCATCAGCCGG	593	609	65	Antisense
TCAGCCGGTGGTGGCGGACTTAGCG	242	625	82	Antisense
AAGGGAACACAACAGGAGCCAGCGT	493	159	166	Antisense
GAGCCAGCGTGTGGATTCTCGAGAA	327	385	181	Antisense
ATGTTAAATTGGTTCTCGACTTCCA	670	45	206	Antisense
GATTTTCAGCGAATGGCCAACAATT	516	429	291	Antisense
GTCGGCGGATGTGATATTCTCATTT	155	473	343	Antisense
GAGAGATTTCCGACTTTTTAGACGA	310	357	383	Antisense

Sequence Source

Affymetrix Proprietary Database

Description	Y49E10.2 /REP_DB=WormBase Gene ID /WP=CE22220 /TR=Q9XTU9 /GB=CAB11547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster	6grp_highest_10_10 > 14 6grp_high1_10_10 > 30 4grp_highest_8_8 > 17 4grp_high_8_8 > 61 6grp_highest_nonorm > 42 6grp_total > 42 4grp_total > 59 6grp_high1_sub > 03 6grp_total_sub > Hat 4grp_rule_based > L3