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[181511_at]

Description Y38H6C.7 /REP_DB=WormBase Gene ID /WP=CE19101 /TR=Q9XX52 /GB=CAA20987.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 7.1
(0.4)
A 		8.9
(3)
A 		6
(-1.1)
A 		4.7
(-3)
A 		4
B 3.5
(-3)
A 		8.7
(-1.5)
A 		25
(3)
A 		4.5
(-2.7)
A 		22
C 6.2
(-3)
A 		7.5
(-2.8)
A 		41.8
(3)
A 		36.6
(2.1)
A 		36
avr 5.6
(-3) 		8.4
(-2.1) 		24.3
(3) 		15.3
(0.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 4
(-3)
A 		8.2
(-2.5)
A 		58.5
(3)
A 		4.2
(-3)
A 		5.3
(-2.9)
A 		8.9
(-2.5)
A 		55
B 4.9
(-3)
A 		9.2
(-2.2)
A 		8.7
(-2.3)
A 		5.5
(-2.9)
A 		36.9
(3)
A 		6.6
(-2.7)
A 		32
C 9.8
(-1.9)
A 		4.7
(-2.7)
A 		8.1
(-2.1)
A 		40.7
(3)
A 		4.8
(-2.7)
A 		2.7
(-3)
A 		38
avr 6.2
(-3) 		7.4
(-2.6) 		25.1
(3) 		16.8
(0.4) 		15.7
(0) 		6.1
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.6
(3)
A 		1.9
(0.8)
A 		1.6
(-0.2)
A 		0.7
(-3)
A 		2
B 1.1
(-2.9)
A 		2.1
(-1.6)
A 		5.8
(3)
A 		1
(-3)
A 		5
C 2.1
(-3)
A 		2.2
(-3)
A 		14.6
(3)
A 		6.2
(-1)
A 		13
avr 1.9
(-3) 		2.1
(-2.8) 		7.3
(3) 		2.6
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.9
(-1.9)
A 		12.7
(3)
A 		1.1
(-2.8)
A 		1.6
(-2.6)
A 		2.2
(-2.3)
A 		12
B 1.7
(-2.9)
A 		3.1
(-2.3)
A 		2.1
(-2.7)
A 		1.5
(-3)
A 		15
(3)
A 		2.4
(-2.6)
A 		14
C 3.6
(-0.8)
A 		1.4
(-2.6)
A 		2.1
(-2)
A 		8.2
(3)
A 		1.6
(-2.4)
A 		0.9
(-3)
A 		7
avr 2
(-2.7) 		2.5
(-2) 		5.6
(2.3) 		3.6
(-0.5) 		6.1
(3) 		1.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12793
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.7 NCBI
Target Description Y38H6C.7 /REP_DB=WormBase Gene ID /WP=CE19101 /TR=Q9XX52 /GB=CAA20987.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075549 NCBI Caenorhabditis elegans Y38H6C.7 (Y38H6C.7) mRNA, complete cds. 11/11 None
GENEFINDER00000041351 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20511275:20511941:1 11/11 None
Y38H6C.7 ENSEMBL cdna:known chromosome:CEL140:V:20511275:20511941:1 gene:Y38H6C.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002994 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20511288-20511941(+) 52.72 95.24
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.7
Entrez Gene 189688 Entrez gene
SwissProt Q9XX52 EMBL-EBI
WormBase CE19101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20987 Hypothetical protein Y38H6C.7 [Caenorhabditis elegans] ref|NP_507950.1| Y38H6C.7 [Caenorhabditis elegans] 4.0E-43
Sequence
Target Sequence 
>C. ELEGANS:181511_AT
tccaccattgtgctcgaacgggcaaaaatttcagtcatattcttatagtagagaatgtcc
agcaagtgctgccgtagcgggtaacatcacggttatccggccagaaccgctgccaaagac
aacgactagacttgccaacgttcatcaatgcacgctgcaagtgcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCATTGTGCTCGAACGGGCAA 459 589 96 Antisense
CCATTGTGCTCGAACGGGCAAAAAT 64 271 100 Antisense
AGTAGAGAATGTCCAGCAAGTGCTG 80 63 142 Antisense
AATGTCCAGCAAGTGCTGCCGTAGC 709 163 149 Antisense
TCCAGCAAGTGCTGCCGTAGCGGGT 301 589 153 Antisense
GCAAGTGCTGCCGTAGCGGGTAACA 461 321 157 Antisense
TGCTGCCGTAGCGGGTAACATCACG 540 579 162 Antisense
CGCTGCCAAAGACAACGACTAGACT 264 255 203 Antisense
CGACTAGACTTGCCAACGTTCATCA 120 251 218 Antisense
AGACTTGCCAACGTTCATCAATGCA 307 71 223 Antisense
ATCAATGCACGCTGCAAGTGCGCTC 322 27 239 Antisense
Sequence Source Affymetrix Proprietary Database