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[181510_at]

Description W09B6.5 /REP_DB=WormBase Gene ID /WP=CE14742 /TR=Q9GZI4 /GB=AAG00032.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 43.9
(-0.3)
A 		60.8
(0.8)
A 		2.6
(-3)
A 		93.4
(3)
P 		91
B 54.8
(3)
A 		33.8
(-3)
A 		38.8
(-1.6)
A 		39.6
(-1.3)
A 		21
C 61.2
(-2)
A 		48.8
(-3)
A 		70.9
(-1.2)
A 		122.5
(3)
P 		74
avr 53.3
(-1) 		47.8
(-1.7) 		37.4
(-3) 		85.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 75
(-0.9)
A 		105.4
(1.7)
A 		121.1
(3)
P 		87.1
(0.2)
A 		82
(-0.3)
A 		49.5
(-3)
P 		72
B 71.8
(-0.2)
P 		127.8
(3)
A 		74.1
(-0.1)
P 		56.5
(-1.1)
A 		56.4
(-1.1)
A 		23.2
(-3)
A 		105
C 28
(-3)
A 		111.1
(3)
P 		78.1
(0.6)
M 		90.8
(1.5)
P 		37.8
(-2.3)
A 		59.3
(-0.7)
P 		83
avr 58.3
(-1.8) 		114.8
(3) 		91.1
(1) 		78.1
(-0.1) 		58.7
(-1.8) 		44
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 16
(3)
A 		13.2
(1.9)
A 		0.7
(-3)
A 		13.7
(2.1)
P 		15
B 17.5
(3)
A 		8.3
(-3)
A 		9
(-2.5)
A 		8.4
(-2.9)
A 		9
C 20.3
(0.5)
A 		14
(-3)
A 		24.7
(3)
A 		20.7
(0.8)
P 		11
avr 17.9
(3) 		11.8
(-2.7) 		11.5
(-3) 		14.3
(-0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.8
(-2.6)
A 		37.5
(3)
A 		26.4
(0.4)
P 		22.1
(-0.6)
A 		24.8
(0)
A 		12.1
(-3)
P 		25
B 25
(-0.1)
P 		42.5
(3)
A 		18
(-1.3)
P 		15
(-1.9)
A 		22.9
(-0.5)
A 		8.6
(-3)
A 		34
C 10.4
(-3)
A 		33.9
(3)
P 		19.9
(-0.6)
M 		18.3
(-1)
P 		12.2
(-2.5)
A 		19.9
(-0.6)
P 		24
avr 16.4
(-2.3) 		38
(3) 		21.4
(-1.1) 		18.5
(-1.8) 		20
(-1.4) 		13.5
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4090
Sequence Type Exemplar sequence
Representative Public ID W09B6.5 NCBI
Target Description W09B6.5 /REP_DB=WormBase Gene ID /WP=CE14742 /TR=Q9GZI4 /GB=AAG00032.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061520 NCBI Caenorhabditis elegans W09B6.5 (W09B6.5) mRNA, complete cds. 11/11 None
W09B6.5 ENSEMBL cdna:known chromosome:CEL140:II:1139283:1142366:-1 gene:W09B6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001937 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1139281-1142365(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09B6.5
Entrez Gene 189305 Entrez gene
SwissProt Q9GZI4 EMBL-EBI
WormBase CE14742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00032 Hypothetical protein W09B6.5 [Caenorhabditis elegans] ref|NP_493921.1| W09B6.5 [Caenorhabditis elegans] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493921.1 3 156-175,180-197,236-258
W09B6.5 3 156-175,180-197,236-258
Sequence
Target Sequence 
>C. ELEGANS:181510_AT
ttttccccaaaaactcactgttgcgaaaaattgatgctaacttgacagacactactcgta
aacggcagtccgagcactcccaggagctcaacgtagttgatggattcaagtgtggccgac
tcgaaatcaattgccacgtcgcagatgctgtccaccgacccaaaaatgagacaaaaaatg
gagaatttcagaaaaaaaaaagtgttttgctttgtgtttattttttttcgcttgctttca
attcttacagtctatctttacggttgtctgaccacttcattttcactttttatcgctact
ggtgttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCCCAAAAACTCACTGTTGCG 606 677 278 Antisense
GATGCTAACTTGACAGACACTACTC 201 413 310 Antisense
GACACTACTCGTAAACGGCAGTCCG 314 367 325 Antisense
CACTCCCAGGAGCTCAACGTAGTTG 488 195 352 Antisense
GATGGATTCAAGTGTGGCCGACTCG 609 407 376 Antisense
GGCCGACTCGAAATCAATTGCCACG 48 543 391 Antisense
CAATTGCCACGTCGCAGATGCTGTC 28 181 405 Antisense
TTTTCGCTTGCTTTCAATTCTTACA 283 677 502 Antisense
ATTCTTACAGTCTATCTTTACGGTT 487 9 518 Antisense
TACGGTTGTCTGACCACTTCATTTT 539 647 536 Antisense
ACTTTTTATCGCTACTGGTGTTGCT 282 103 562 Antisense
Sequence Source Affymetrix Proprietary Database