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[181509_at]

Description C15H9.9 /REP_DB=WormBase Gene ID /WP=CE04001 /TR=Q18032 /GB=AAB52666.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 05      6grp_total > 23      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4521
1 2 3 4 range
A 7158.8
(2.9)
P 		7203.3
(3)
P 		5963.8
(1.3)
P 		2767.4
(-3)
P 		4436
B 6060.4
(2.4)
P 		6468.2
(3)
P 		6017.8
(2.3)
P 		2681.9
(-3)
P 		3786
C 6850.7
(3)
P 		6390.2
(2.3)
P 		6024.5
(1.7)
P 		2914.7
(-3)
P 		3936
avr 6690
(3) 		6687.2
(3) 		6002
(1.9) 		2788
(-3) 		3902

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5278
1 2 3 4 5 6 range
A 8295.5
(3)
P 		6314.3
(0.7)
P 		6744.6
(1.2)
P 		5866.6
(0.1)
P 		4472.1
(-1.5)
P 		3193
(-3)
P 		5103
B 7541.1
(3)
P 		6249.6
(1.3)
P 		6442.8
(1.5)
P 		4486.8
(-1.1)
P 		4539.7
(-1)
P 		3017.9
(-3)
P 		4523
C 6948.2
(3)
P 		5901.7
(1.3)
P 		6453.5
(2.2)
P 		6654.3
(2.5)
P 		4958.8
(-0.2)
P 		3254.7
(-3)
P 		3694
avr 7594.9
(3) 		6155.2
(1.1) 		6547
(1.6) 		5669.2
(0.4) 		4656.9
(-1) 		3155.2
(-3) 		4440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2201
1 2 3 4 range
A 2606.5
(3)
P 		1563.6
(0.2)
P 		1559
(0.1)
P 		405.1
(-3)
P 		2201
B 1932.6
(3)
P 		1597.5
(1.5)
P 		1394.5
(0.6)
P 		571.5
(-3)
P 		1361
C 2267.8
(3)
P 		1837.2
(1.5)
P 		2099.7
(2.4)
P 		491.5
(-3)
P 		1776
avr 2269
(3) 		1666.1
(1) 		1684.4
(1) 		489.4
(-3) 		1780

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1847
1 2 3 4 5 6 range
A 1529.2
(0.1)
P 		2245.7
(3)
P 		1468.8
(-0.2)
P 		1487.9
(-0.1)
P 		1349.5
(-0.7)
P 		777.4
(-3)
P 		1468
B 2623.9
(3)
P 		2080.2
(0.8)
P 		1564.5
(-1.2)
P 		1188.4
(-2.7)
P 		1844.4
(-0.1)
P 		1125.4
(-3)
P 		1499
C 2575.4
(3)
P 		1800.8
(-0.1)
P 		1642.5
(-0.8)
P 		1338.2
(-2)
P 		1604.6
(-0.9)
P 		1089.5
(-3)
P 		1486
avr 2242.8
(3) 		2042.2
(2) 		1558.6
(-0.3) 		1338.2
(-1.4) 		1599.5
(-0.1) 		997.4
(-3) 		1245
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17304
Sequence Type Exemplar sequence
Representative Public ID C15H9.9 NCBI
Target Description C15H9.9 /REP_DB=WormBase Gene ID /WP=CE04001 /TR=Q18032 /GB=AAB52666.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076628 NCBI Caenorhabditis elegans C15H9.9 (C15H9.9) mRNA, complete cds. 11/11 None
SNAP00000042807 ENSEMBL cdna:SNAP chromosome:CEL140:X:6127582:6128233:-1 11/11 None
GENEFINDER00000042817 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6127582:6128233:-1 11/11 None
C15H9.9.1 ENSEMBL cdna:known chromosome:CEL140:X:6127415:6128233:-1 gene:C15H9.9 11/11 None
C15H9.9.2 ENSEMBL cdna:known chromosome:CEL140:X:6127431:6128284:-1 gene:C15H9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6127581-6128233(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.9
Entrez Gene 180885 Entrez gene
SwissProt Q18032 EMBL-EBI
WormBase CE04001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52666 Hypothetical protein C15H9.9 [Caenorhabditis elegans] ref|NP_509029.1| C15H9.9 [Caenorhabditis elegans] 9.0E-61
blast CAE68876 Hypothetical protein CBG14839 [Caenorhabditis briggsae] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181509_AT
cttctctcgctttgggtgttagtgccaatatctcttgctaccaatgtacatccaacgaga
acccaacttgtgatgcaaacgacgacggagcacttgaggctttcaagaagacatgcacac
cactaactgagggaactttcaaaggaaacgctgctgttggatgccgtaaaatcacacaga
gcgtagaaggagttctttccgttgtcagagagtgcgcttattctggagagccagttgacg
gactcaagaagactggaaaccatgctatccgcattcactattatcaatgcgagaacgaga
aggctggaactccatgtaactctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTCTCGCTTTGGGTGTTAGTGC 405 221 41 Antisense
GTTAGTGCCAATATCTCTTGCTACC 558 445 58 Antisense
ATCTCTTGCTACCAATGTACATCCA 654 31 70 Antisense
TGTACATCCAACGAGAACCCAACTT 201 559 85 Antisense
GACATGCACACCACTAACTGAGGGA 310 367 150 Antisense
GGAAACGCTGCTGTTGGATGCCGTA 335 527 184 Antisense
GAGTTCTTTCCGTTGTCAGAGAGTG 125 399 230 Antisense
GAGTGCGCTTATTCTGGAGAGCCAG 306 401 250 Antisense
GAAGACTGGAAACCATGCTATCCGC 540 339 288 Antisense
TGCTATCCGCATTCACTATTATCAA 129 581 303 Antisense
GGCTGGAACTCCATGTAACTCTGTC 597 539 342 Antisense
Sequence Source Affymetrix Proprietary Database