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[181508_s_at]

Description F10D11.5 /REP_DB=WormBase Gene ID /WP=CE17650 /TR=O17779 /GB=CAB02918.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 78.2
(1.1)
A 		103.7
(3)
A 		21.6
(-3)
A 		74.5
(0.9)
A 		82
B 56.6
(-3)
A 		131.7
(3)
A 		103.5
(0.7)
A 		103.9
(0.8)
A 		75
C 100.5
(0.1)
A 		132.3
(2)
A 		50
(-3)
A 		148.9
(3)
M 		99
avr 78.4
(-1.1) 		122.6
(3) 		58.4
(-3) 		109.1
(1.7) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 106.3
(0.6)
A 		45.1
(-3)
A 		67.1
(-1.7)
A 		74.1
(-1.3)
A 		80.3
(-0.9)
A 		146.3
(3)
M 		101
B 94.8
(3)
A 		49.3
(0)
A 		54
(0.3)
A 		3.2
(-3)
A 		57.3
(0.5)
A 		69.7
(1.4)
P 		92
C 90.2
(3)
A 		54.4
(-0.9)
A 		69.2
(0.7)
A 		35.8
(-3)
A 		64.8
(0.2)
A 		66.1
(0.3)
A 		54
avr 97.1
(3) 		49.6
(-1.8) 		63.4
(-0.4) 		37.7
(-3) 		67.5
(0) 		94
(2.7) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 28.5
(3)
A 		22.5
(1.4)
A 		5.7
(-3)
A 		10.9
(-1.6)
A 		23
B 18
(-3)
A 		32.5
(3)
A 		24
(-0.5)
A 		22.1
(-1.3)
A 		15
C 33.3
(1.6)
A 		38
(3)
A 		17.4
(-3)
A 		25.1
(-0.8)
M 		21
avr 26.6
(1.3) 		31
(3) 		15.7
(-3) 		19.4
(-1.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.6
(-1.6)
A 		16.1
(-2.6)
A 		14.6
(-3)
A 		18.8
(-1.8)
A 		24.2
(-0.3)
A 		35.6
(3)
M 		21
B 33
(3)
A 		16.4
(-0.1)
A 		13.1
(-0.7)
A 		0.8
(-3)
A 		23.3
(1.2)
A 		26
(1.7)
P 		32
C 33.4
(3)
A 		16.6
(-0.8)
A 		17.6
(-0.6)
A 		7.2
(-3)
A 		21
(0.2)
A 		22.1
(0.4)
A 		26
avr 28.7
(3) 		16.4
(-0.7) 		15.1
(-1.1) 		8.9
(-3) 		22.8
(1.2) 		27.9
(2.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2243
Sequence Type Exemplar sequence
Representative Public ID F10D11.5 NCBI
Target Description F10D11.5 /REP_DB=WormBase Gene ID /WP=CE17650 /TR=O17779 /GB=CAB02918.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059893 NCBI Caenorhabditis elegans F10D11.5 (F10D11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043622 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8449727:8453056:-1 11/11 None
SNAP00000043614 ENSEMBL cdna:SNAP chromosome:CEL140:I:8450851:8453056:-1 11/11 None
F10D11.5 ENSEMBL cdna:known chromosome:CEL140:I:8450851:8453056:-1 gene:F10D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8450781-8452987(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D11.5
Entrez Gene 172634 Entrez gene
SwissProt O17779 EMBL-EBI
WormBase CE17650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02918 Hypothetical protein F10D11.5 [Caenorhabditis elegans] ref|NP_492294.1| F10D11.5 [Caenorhabditis elegans] 0.0
blast CAA87417 Hypothetical protein T15H9.4 [Caenorhabditis elegans] ref|NP_496069.1| T15H9.4 [Caenorhabditis elegans] sp|Q09354|YRY4_CAEEL Hypothetical protein T15H9.4 in chromosome II 6.0E-81
blast CAA87417 Hypothetical protein T15H9.4 [Caenorhabditis elegans] ref|NP_496069.1| T15H9.4 [Caenorhabditis elegans] sp|Q09354|YRY4_CAEEL Hypothetical protein T15H9.4 in chromosome II 9.0E-81
blast CAE57954 Hypothetical protein CBG01013 [Caenorhabditis briggsae] 3.0E-77
Sequence
Target Sequence 
>C. ELEGANS:181508_S_AT
taatccttaagcctccattcgagaatgcgaagccctacgaatatcctccatttgttgtga
atcatcaaacccagttggtgtctgctaaagccttgtcatcgcctgttacaaataccccag
tggctcacagtcctccacaagctctgccgaacaaaactataatcgttccggttggatcaa
catcttctgtgctcgtcccttcaacaacttctaatgcactgccaccagtattgtctctaa
attcgcaaagcctttcagtcaaaacattgtccatggctccacaagtttcccaagttgaac
ctccaacgtctgtgatgaatggaccaacagaagctgccgacttgcatgttgctgttcctc
catcaccaaatactccaagaaaacgtagcatttttaagtacaagcaagagaaaggacaaa
caccggagcatcagactacaatcagttttgttgaacaaccggaaacgtcgaagataacat
ctgatatttcggaagatgaagagctcaagaagtgcgacccaagatctggcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCTTAAGCCTCCATTCGAGAA 517 635 1130 Antisense
GAATGCGAAGCCCTACGAATATCCT 406 331 1152 Antisense
GTGTCTGCTAAAGCCTTGTCATCGC 665 485 1207 Antisense
TGTCATCGCCTGTTACAAATACCCC 440 557 1223 Antisense
GGTTGGATCAACATCTTCTGTGCTC 481 507 1299 Antisense
TCAACAACTTCTAATGCACTGCCAC 25 631 1330 Antisense
AACATTGTCCATGGCTCCACAAGTT 561 137 1392 Antisense
TTGAACCTCCAACGTCTGTGATGAA 265 705 1424 Antisense
AGAAGCTGCCGACTTGCATGTTGCT 112 75 1458 Antisense
GACAAACACCGGAGCATCAGACTAC 588 365 1544 Antisense
GAAGTGCGACCCAAGATCTGGCATC 680 335 1638 Antisense
Sequence Source Affymetrix Proprietary Database