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[181506_at]

Description M03E7.5 /REP_DB=WormBase Gene ID /WP=CE07398 /TR=Q21499 /GB=AAB00726.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2050
1 2 3 4 range
A 253.9
(-2.8)
P 		205
(-3)
P 		200.8
(-3)
P 		2149
(3)
P 		1948
B 265.7
(-2.9)
P 		229.6
(-3)
P 		223.1
(-3)
P 		2220.4
(3)
P 		1997
C 323
(-2.7)
P 		216
(-3)
P 		233.3
(-2.9)
P 		2251
(3)
P 		2035
avr 280.9
(-2.8) 		216.9
(-3) 		219.1
(-3) 		2206.8
(3) 		1990

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 649
1 2 3 4 5 6 range
A 320.1
(-3)
P 		368.1
(-2.2)
P 		564.2
(1.3)
P 		472.3
(-0.3)
P 		521.9
(0.6)
P 		659.8
(3)
P 		340
B 383.3
(-3)
P 		505.3
(-1.7)
P 		504.1
(-1.7)
P 		588.6
(-0.8)
P 		510.5
(-1.6)
P 		944.2
(3)
P 		561
C 294.9
(-3)
P 		404.5
(-1.7)
P 		388.5
(-1.9)
P 		633.6
(1.1)
P 		543
(-0)
P 		795.6
(3)
P 		501
avr 332.8
(-3) 		426
(-1.8) 		485.6
(-1) 		564.8
(-0) 		525.1
(-0.5) 		799.9
(3) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 92.4
(-1.9)
P 		44.5
(-3)
P 		52.5
(-2.8)
P 		314.6
(3)
P 		270
B 84.7
(-2.5)
P 		56.7
(-2.9)
P 		51.7
(-3)
P 		473.2
(3)
P 		422
C 106.9
(-2.2)
P 		62.1
(-3)
P 		81.3
(-2.6)
P 		379.6
(3)
P 		318
avr 94.7
(-2.3) 		54.4
(-3) 		61.8
(-2.9) 		389.1
(3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 59
(-3)
P 		130.9
(1.2)
P 		122.9
(0.8)
P 		119.8
(0.6)
P 		157.5
(2.8)
P 		160.6
(3)
P 		102
B 133.4
(-2.7)
P 		168.2
(-1.8)
P 		122.4
(-3)
P 		155.9
(-2.1)
P 		207.4
(-0.8)
P 		352.1
(3)
P 		230
C 109.3
(-2.6)
P 		123.4
(-2.1)
P 		98.9
(-3)
P 		127.4
(-2)
P 		175.7
(-0.2)
P 		266.3
(3)
P 		167
avr 100.6
(-3) 		140.8
(-1.5) 		114.7
(-2.5) 		134.4
(-1.7) 		180.2
(0) 		259.7
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12449
Sequence Type Exemplar sequence
Representative Public ID M03E7.5 NCBI
Target Description M03E7.5 /REP_DB=WormBase Gene ID /WP=CE07398 /TR=Q21499 /GB=AAB00726.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072083 NCBI Caenorhabditis elegans M03E7.5 (M03E7.5) mRNA, complete cds. 11/11 None
SNAP00000029717 ENSEMBL cdna:SNAP chromosome:CEL140:V:5620944:5621791:-1 11/11 None
GENEFINDER00000029723 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5620944:5624787:-1 11/11 None
M03E7.5.2 ENSEMBL cdna:known chromosome:CEL140:V:5620944:5622735:-1 gene:M03E7.5 11/11 None
M03E7.5.1 ENSEMBL cdna:known chromosome:CEL140:V:5620944:5621901:-1 gene:M03E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5620943-5621922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03E7.5
Entrez Gene 187425 Entrez gene
SwissProt Q21499 EMBL-EBI
WormBase CE30820 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00726 Hypothetical protein M03E7.5 [Caenorhabditis elegans] ref|NP_504484.2| M03E7.5 [Caenorhabditis elegans] 1.0E-112
blast AAB00726 Hypothetical protein M03E7.5 [Caenorhabditis elegans] ref|NP_504484.2| M03E7.5 [Caenorhabditis elegans] 1.0E-111
blast CAE64600 Hypothetical protein CBG09355 [Caenorhabditis briggsae] 6.0E-97
blast CAE64600 Hypothetical protein CBG09355 [Caenorhabditis briggsae] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR007705 EMBL-EBI Vesicle transport v-SNARE 4.3E-47
Pfam IPR007705 EMBL-EBI Vesicle transport v-SNARE 4.3E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504484.2 1 194-213
M03E7.5.2 1 194-213
M03E7.5.1 1 194-213
SNAP00000029717 1 194-213
GENEFINDER00000029723 2 80-99,296-315
Sequence
Target Sequence 
>C. ELEGANS:181506_AT
gaaatcgacaatgttcagctacttttgattgcgattgaacgtcaaacgggaaatcacgaa
gtggatcgattaattcaggatgcaaatagtagtcttatgaaaactgaaacacacatgttt
cgactggaatcacaactgggcagagaaccggctccagttagacagaaagcttcgttcaaa
atggatcaattgaaaagtgatgtgtgtcttatcaaaaattcattgagaacaatgacaaat
cgtcacactaatcgaaagaagcaagcagaagaaaagaaagcacttctgaaacagaggttt
acaacaaatcaagaaacgcgtgtgaatctggaatttgacgaagagctcaacttgaatgat
aaactgaaatactcggataatatgatcgatcaaatgctagcccaaggtgcaagcgtcttt
gaggatcttcaaaaacagaagtacaacttgctgagcattcgaaaacgattccattttctg
accaaatccctgggaatatctgataccacaattcgactcatcgaaaagcgtgtgcgagaa
gacaagaaactctttatgatcggtgtaatttgttgcctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCGACAATGTTCAGCTACTTT 461 361 130 Antisense
CAGCTACTTTTGATTGCGATTGAAC 672 203 145 Antisense
GTTTCGACTGGAATCACAACTGGGC 80 443 246 Antisense
ACAACTGGGCAGAGAACCGGCTCCA 188 113 261 Antisense
GAACCGGCTCCAGTTAGACAGAAAG 639 343 274 Antisense
AATGCTAGCCCAAGGTGCAAGCGTC 131 165 522 Antisense
GTGCAAGCGTCTTTGAGGATCTTCA 72 481 536 Antisense
TTCCATTTTCTGACCAAATCCCTGG 132 701 598 Antisense
AATCCCTGGGAATATCTGATACCAC 576 167 614 Antisense
CTGATACCACAATTCGACTCATCGA 392 237 629 Antisense
GATCGGTGTAATTTGTTGCCTGATA 708 417 687 Antisense
Sequence Source Affymetrix Proprietary Database