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[181505_s_at]

Description Y37H9A.3 /REP_DB=WormBase Gene ID /WP=CE20229 /TR=Q9U2M8 /GB=CAB63350.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 35      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 603.1
(3)
P 		395.3
(-2.4)
P 		373.4
(-3)
P 		437.5
(-1.3)
P 		230
B 532.3
(-0.2)
P 		477.7
(-2.3)
P 		458.7
(-3)
P 		618.4
(3)
P 		160
C 554.3
(3)
P 		458.5
(-3)
P 		462.1
(-2.8)
P 		536.8
(1.9)
P 		96
avr 563.2
(3) 		443.8
(-2.4) 		431.4
(-3) 		530.9
(1.5) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 619.9
(3)
P 		445.2
(-1.2)
P 		620.6
(3)
P 		377.8
(-2.8)
P 		369.1
(-3)
P 		451.8
(-1)
P 		252
B 662.7
(3)
P 		577.9
(1.2)
P 		448.2
(-1.4)
P 		398.3
(-2.5)
P 		372.6
(-3)
P 		499
(-0.4)
P 		290
C 513.5
(2.1)
P 		555.5
(3)
P 		414.7
(0)
P 		271
(-3)
P 		374.8
(-0.8)
P 		405
(-0.2)
P 		285
avr 598.7
(3) 		526.2
(1.3) 		494.5
(0.5) 		349
(-3) 		372.2
(-2.4) 		451.9
(-0.5) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 219.6
(3)
P 		85.8
(-2.2)
P 		97.6
(-1.7)
P 		64
(-3)
P 		156
B 169.7
(3)
P 		118
(-1.9)
P 		106.3
(-3)
P 		131.8
(-0.6)
P 		63
C 183.5
(3)
P 		131.8
(-0.3)
P 		161.1
(1.6)
P 		90.5
(-3)
P 		93
avr 190.9
(3) 		111.9
(-2) 		121.7
(-1.3) 		95.4
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 114.3
(-1.2)
P 		158.3
(3)
P 		135.2
(0.8)
P 		95.8
(-3)
P 		111.4
(-1.5)
P 		110
(-1.6)
P 		63
B 230.6
(3)
P 		192.4
(1.2)
P 		108.8
(-2.8)
P 		105.5
(-3)
P 		151.4
(-0.8)
P 		186.1
(0.9)
P 		125
C 190.3
(3)
P 		169.5
(2.1)
P 		105.5
(-0.7)
P 		54.5
(-3)
P 		121.3
(-0)
P 		135.6
(0.6)
P 		136
avr 178.4
(3) 		173.4
(2.7) 		116.5
(-1) 		85.3
(-3) 		128
(-0.2) 		143.9
(0.8) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181505_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2255
Sequence Type Exemplar sequence
Representative Public ID Y37H9A.3 NCBI
Target Description Y37H9A.3 /REP_DB=WormBase Gene ID /WP=CE20229 /TR=Q9U2M8 /GB=CAB63350.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061011 NCBI Caenorhabditis elegans Y37H9A.3 (Y37H9A.3) mRNA, complete cds. 11/11 None
SNAP00000010049 ENSEMBL cdna:SNAP chromosome:CEL140:I:13790024:13803208:1 11/11 None
GENEFINDER00000010054 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13790182:13800283:1 11/11 None
Y37H9A.3 ENSEMBL cdna:known chromosome:CEL140:I:13787017:13800283:1 gene:Y37H9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13792653-13800214(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H9A.3
Entrez Gene 173244 Entrez gene
SwissProt Q9U2M8 EMBL-EBI
WormBase CE37563 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6571.1.S1_S_AT similar to coiled-coil and C2 domain containing 1B cfa
DROSOPHILA_2:1635818_AT dm
DROSGENOME1:154140_AT dm
HG-U133_PLUS_2:242487_AT coiled-coil and C2 domain containing 1B hs
HG-U133B:242487_AT coiled-coil and C2 domain containing 1B hs
HU35KSUBA:RC_AA252529_AT coiled-coil and C2 domain containing 1B hs
HU35KSUBA:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
HU35KSUBB:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
HU35KSUBC:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
HU35KSUBD:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
HUGENEFL:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
HC-G110:HUM_ALU_AT coiled-coil and C2 domain containing 1B hs
U133_X3P:HS.318773.0.A1_3P_AT coiled-coil and C2 domain containing 1B hs
U133_X3P:HS.250953.0.A1_3P_AT coiled-coil and C2 domain containing 1B hs
HG-U133_PLUS_2:225323_AT coiled-coil and C2 domain containing 1B hs
HG-U133B:225323_AT coiled-coil and C2 domain containing 1B hs
HG-U95B:43361_S_AT coiled-coil and C2 domain containing 1B hs
HG-U95B:53146_AT coiled-coil and C2 domain containing 1B hs
HG-U95C:63637_AT coiled-coil and C2 domain containing 1B hs
HG-U95C:63729_F_AT coiled-coil and C2 domain containing 1B hs
HG-U133_PLUS_2:236568_AT Coiled-coil and C2 domain containing 1B hs
HG-U133B:236568_AT Coiled-coil and C2 domain containing 1B hs
HG-U133_PLUS_2:242848_X_AT Coiled-coil and C2 domain containing 1B hs
HG-U133B:242848_X_AT Coiled-coil and C2 domain containing 1B hs
HG-U95C:55990_I_AT Coiled-coil and C2 domain containing 1B hs
HG-U95C:55992_R_AT Coiled-coil and C2 domain containing 1B hs
HG-U95E:77924_AT Coiled-coil and C2 domain containing 1B hs
HU35KSUBB:RC_H15054_AT Coiled-coil and C2 domain containing 1B hs
U133_X3P:HS.215974.0.A1_3P_AT Coiled-coil and C2 domain containing 1B hs
U133_X3P:HS.215974.1.A1_3P_AT Coiled-coil and C2 domain containing 1B hs
MG-U74BV2:117019_AT coiled-coil and C2 domain containing 1B mm
MOE430B:1433861_AT coiled-coil and C2 domain containing 1B mm
MOUSE430_2:1433861_AT coiled-coil and C2 domain containing 1B mm
MOE430B:1457749_AT coiled-coil and C2 domain containing 1B mm
MOUSE430_2:1457749_AT coiled-coil and C2 domain containing 1B mm
MG-U74BV2:109531_AT MKIAA1836 protein mm
MOE430B:1443606_AT MKIAA1836 protein mm
MOUSE430_2:1443606_AT MKIAA1836 protein mm
MU19KSUBB:TC27280_AT MKIAA1836 protein mm
RG-U34B:RC_AA945117_AT similar to RIKEN cDNA A830039B04 gene (predicted) rn
RAE230A:1375864_AT similar to RIKEN cDNA A830039B04 gene (predicted) rn
RAT230_2:1375864_AT similar to RIKEN cDNA A830039B04 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB63350 Hypothetical protein Y37H9A.3 [Caenorhabditis elegans] ref|NP_493412.2| Y37H9A.3 [Caenorhabditis elegans] 0.0
blast CAE68028 Hypothetical protein CBG13644 [Caenorhabditis briggsae] 0.0
blast EAA09979 ENSANGP00000020521 [Anopheles gambiae str. PEST] ref|XP_314506.2| ENSANGP00000020521 [Anopheles gambiae str. PEST] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:181505_S_AT
gacctgcttttagtccgtgaagtcgcaaaacggggtcttcaagtacccaaatttcattac
gaaatgcgtcagattccatcagctgacctatttcctgatttggctgatgacgtcatcgag
ttgacgattgtttcgtgcagagacgtgccccttccatcaggatatgaaactcatcatgca
aatctatttattaaatatacattcccagcagttgtcaatgatctaccacagactggaaaa
actaaattaattgccggaactgcttcgccggatttcggcgaatcgattatgttgaatatt
ggaagtggaaaatcaagaaatagcaaactacagagaacttttaagagaggaggtctcaag
tttgaggtattccaaaaaggtggattcatgcggagcgacaaacttttgggcacttgtgaa
tggaaattggagaagctggaacatagtgctgaaatggaagaatcacttccattgaaggac
ggccgtaaagcagttggtggtctcttgtcggcgaaagttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTGCTTTTAGTCCGTGAAGTCG 495 383 907 Antisense
GTCTTCAAGTACCCAAATTTCATTA 443 469 941 Antisense
GAAATGCGTCAGATTCCATCAGCTG 19 361 967 Antisense
GCTGACCTATTTCCTGATTTGGCTG 163 297 988 Antisense
GTGCCCCTTCCATCAGGATATGAAA 258 479 1051 Antisense
AATTGCCGGAACTGCTTCGCCGGAT 147 177 1155 Antisense
AAAGGTGGATTCATGCGGAGCGACA 672 119 1282 Antisense
GGAGCGACAAACTTTTGGGCACTTG 704 517 1298 Antisense
ATCACTTCCATTGAAGGACGGCCGT 603 21 1368 Antisense
GGCCGTAAAGCAGTTGGTGGTCTCT 35 543 1387 Antisense
GTGGTCTCTTGTCGGCGAAAGTTCG 421 489 1403 Antisense
Sequence Source Affymetrix Proprietary Database