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[181503_at]

Description C24A1.4 /REP_DB=WormBase Gene ID /WP=CE08336 /TR=O17056 /GB=AAB70313.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 11.8
(-2.3)
A 		2.2
(-3)
A 		13
(-2.2)
A 		85.7
(3)
P 		84
B 22.2
(3)
A 		18.9
(2)
A 		2.3
(-3)
A 		4.5
(-2.3)
A 		20
C 10.2
(-3)
A 		52
(0.5)
A 		11.5
(-2.9)
A 		81.3
(3)
P 		71
avr 14.7
(-2.3) 		24.4
(-1.1) 		8.9
(-3) 		57.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		20.5
(3)
A 		15.9
(1.6)
A 		1
(-3)
A 		11.6
(0.3)
A 		1.5
(-2.8)
A 		20
B 0.8
(-3)
A 		22.5
(2)
A 		2.8
(-2.5)
A 		21.6
(1.8)
A 		26.9
(3)
A 		25.9
(2.8)
A 		26
C 1.6
(-2.9)
A 		42.2
(3)
A 		1.5
(-2.9)
A 		25.5
(0.6)
A 		1.9
(-2.9)
A 		1
(-3)
A 		41
avr 1.5
(-3) 		28.4
(3) 		6.7
(-1.8) 		16
(0.2) 		13.5
(-0.3) 		9.5
(-1.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.3
(-1.1)
A 		0.5
(-3)
A 		3.4
(-1.6)
A 		12.5
(3)
P 		12
B 7.1
(3)
A 		4.7
(0.8)
A 		0.5
(-3)
A 		1
(-2.5)
A 		7
C 3.4
(-3)
A 		14.9
(3)
A 		4
(-2.7)
A 		13.7
(2.4)
P 		12
avr 4.9
(-0.9) 		6.7
(0.8) 		2.6
(-3) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		7.3
(3)
A 		3.5
(-0.3)
A 		0.3
(-3)
A 		3.5
(-0.3)
A 		0.4
(-2.9)
A 		7
B 0.3
(-3)
A 		7.5
(1.1)
A 		0.7
(-2.8)
A 		5.7
(0.1)
A 		10.9
(3)
A 		9.6
(2.3)
A 		11
C 0.6
(-2.9)
A 		12.9
(3)
A 		0.4
(-3)
A 		5.1
(-0.7)
A 		0.6
(-2.9)
A 		0.3
(-3)
A 		13
avr 0.4
(-3) 		9.2
(3) 		1.5
(-2.3) 		3.7
(-0.8) 		5
(0.1) 		3.4
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8344
Sequence Type Exemplar sequence
Representative Public ID C24A1.4 NCBI
Target Description C24A1.4 /REP_DB=WormBase Gene ID /WP=CE08336 /TR=O17056 /GB=AAB70313.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038337 ENSEMBL cdna:SNAP chromosome:CEL140:III:700513:701031:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038348 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:700512-701031(-) 31.79 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60509 Hypothetical protein Y39A3A.1 [Caenorhabditis elegans] 2.0E-51
blast T26396 hypothetical protein Y105C5B.t - Caenorhabditis elegans 1.0E-21
blast AAF60722 Hypothetical protein Y49F6A.4 [Caenorhabditis elegans] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.1E-38
Sequence
Target Sequence 
>C. ELEGANS:181503_AT
atgcgcacattgcgagcgttcgcattgtgccctttatgcttgccactgtggcgcagattt
tcgcaaacacgagcattgtgtgcgtcgaagcattttgcttacactgcgaatcacctgtgt
tatgtgaaccataccagaaagaaacagtgggtcccggtcgaggaacacgctaaacctgat
ctcaaaggggaacttcacaagaaaaaagtgcttctctcaatttggtgggacagtacgggt
gttattttccgagagcttcttccagacggcgccaccatcaacgctgacctgtactgcact
caattggaaaaggtagtccatgctcatcaattacaccgccctagaggatcaaaattgttg
ctgttacatgacaacgcaagacctcatacagctgtgaagacccgccagaagctccaattc
tcaggagttctatgcggaggaaattgctcaacttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGCACATTGCGAGCGTTCGCAT 381 41 13 Antisense
TTCGCATTGTGCCCTTTATGCTTGC 693 695 31 Antisense
CCTTTATGCTTGCCACTGTGGCGCA 132 269 43 Antisense
GCAGATTTTCGCAAACACGAGCATT 81 313 65 Antisense
CACGAGCATTGTGTGCGTCGAAGCA 442 199 80 Antisense
AAGCATTTTGCTTACACTGCGAATC 373 151 100 Antisense
CACTGCGAATCACCTGTGTTATGTG 37 199 114 Antisense
GGAACACGCTAAACCTGATCTCAAA 298 529 174 Antisense
GACAGTACGGGTGTTATTTTCCGAG 125 273 241 Antisense
TTATTTTCCGAGAGCTTCTTCCAGA 519 677 254 Antisense
GCGGAGGAAATTGCTCAACTTCCGT 637 289 446 Antisense
Sequence Source Affymetrix Proprietary Database