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[181502_s_at]

Description W07A12.6 /REP_DB=WormBase Gene ID /WP=CE03797 /TR=Q9XVW0 /GB=CAA92707.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 84      6grp_total > 89      4grp_total > 25      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 941
1 2 3 4 range
A 410.6
(-3)
P 		937
(1.5)
P 		789.5
(0.2)
P 		1113.4
(3)
P 		703
B 409.8
(-3)
P 		898.8
(0.3)
P 		758.6
(-0.6)
P 		1298.8
(3)
P 		889
C 358.1
(-3)
P 		891.6
(0.9)
P 		859.8
(0.7)
P 		1179.5
(3)
P 		821
avr 392.8
(-3) 		909.1
(0.9) 		802.6
(0.1) 		1197.2
(3) 		804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 626.8
(-0.9)
P 		459
(-3)
P 		493.5
(-2.6)
P 		461.7
(-3)
P 		832.7
(1.7)
P 		940
(3)
P 		481
B 674.6
(-1.1)
P 		581.1
(-2.7)
P 		561
(-3)
P 		604.9
(-2.3)
P 		769.2
(0.5)
P 		919.6
(3)
P 		359
C 607.9
(-0.5)
P 		517.3
(-2.1)
P 		488.7
(-2.6)
P 		467.5
(-3)
P 		800.9
(3)
P 		793
(2.9)
P 		333
avr 636.4
(-1) 		519.1
(-2.9) 		514.4
(-3) 		511.4
(-3) 		800.9
(1.7) 		884.2
(3) 		373
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 149.5
(-3)
P 		203.4
(2.7)
P 		206.4
(3)
P 		163
(-1.6)
P 		57
B 130.7
(-3)
P 		222
(0.7)
P 		175.8
(-1.1)
P 		276.8
(3)
P 		146
C 118.6
(-3)
P 		256.3
(1.6)
P 		299.7
(3)
P 		198.9
(-0.3)
P 		181
avr 132.9
(-3) 		227.2
(3) 		227.3
(3) 		212.9
(2.1) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 115.5
(-2.7)
P 		163.2
(-0.7)
P 		107.5
(-3)
P 		117.1
(-2.6)
P 		251.3
(3)
P 		228.9
(2.1)
P 		144
B 234.7
(-0.1)
P 		193.4
(-1.3)
P 		136.2
(-3)
P 		160.2
(-2.3)
P 		312.5
(2.1)
P 		342.9
(3)
P 		207
C 225.3
(1.6)
P 		157.8
(-0.8)
P 		124.4
(-1.9)
P 		94
(-3)
P 		259.1
(2.8)
P 		265.5
(3)
P 		172
avr 191.8
(-0.3) 		171.5
(-1.1) 		122.7
(-3) 		123.8
(-3) 		274.3
(2.8) 		279.1
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181502_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3601
Sequence Type Exemplar sequence
Representative Public ID W07A12.6 NCBI
Target Description W07A12.6 /REP_DB=WormBase Gene ID /WP=CE03797 /TR=Q9XVW0 /GB=CAA92707.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063553(11), NM_063552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063553 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-323) (tag-323) mRNA, complete cds. 11/11 A 
NM_063552 NCBI Caenorhabditis elegans W07A12.6 (W07A12.6) mRNA, complete cds. 11/11 A 
SNAP00000000168 ENSEMBL cdna:SNAP chromosome:CEL140:II:9158046:9160269:1 11/11 None
SNAP00000000169 ENSEMBL cdna:SNAP chromosome:CEL140:II:9161331:9163205:1 11/11 None
GENEFINDER00000000173 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9161462:9163205:1 11/11 None
GENEFINDER00000000174 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9158046:9159784:1 11/11 None
W07A12.6 ENSEMBL cdna:known chromosome:CEL140:II:9158046:9159494:1 gene:W07A12.6 11/11 A 
W07A12.7 ENSEMBL cdna:known chromosome:CEL140:II:9161289:9163347:1 gene:W07A12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9158042-9159491(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol tag-323
Ensembl W07A12.6
W07A12.7
Entrez Gene 174455 Entrez gene
189275 Entrez gene
SwissProt Q9XVW0 EMBL-EBI
Q9XVW1 EMBL-EBI
WormBase CE35050 Wormbase
CE20163 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92706 Hypothetical protein W07A12.7 [Caenorhabditis elegans] ref|NP_495954.1| Temporarily Assigned Gene name family member (tag-323) [Caenorhabditis elegans] 0.0
blast CAE57892 Hypothetical protein CBG00938 [Caenorhabditis briggsae] 0.0
blast CAA92707 Hypothetical protein W07A12.6 [Caenorhabditis elegans] ref|NP_495953.2| W07A12.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.7E-44
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.0E-37
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.5E-69
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.8E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495954.1 11 54-76,97-119,139-161,185-207,242-264,271-293,336-355,362-379,394-416,437-459,463-485
NP_495953.2 8 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391
W07A12.6 8 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391
W07A12.7 11 54-76,97-119,139-161,185-207,242-264,271-293,336-355,362-379,394-416,437-459,463-485
SNAP00000000168 10 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391,404-423,438-460
SNAP00000000169 11 42-64,85-107,127-149,173-195,230-252,259-281,324-343,350-367,382-404,425-447,451-473
GENEFINDER00000000173 9 88-110,135-157,192-214,221-243,286-305,312-329,344-366,387-409,413-435
GENEFINDER00000000174 10 13-35,117-139,171-193,203-225,232-254,287-309,322-340,355-377,390-409,424-446
Sequence
Target Sequence 
>C. ELEGANS:181502_S_AT
tctcactattaccactataattgcctctatgttcatccgtgcgggttactgtaccgccta
tggaacttgcaaccacagtgatgtggatgtagcgtttataacaaaaccaggacaagatcc
cgcagttttagcaagatcttatgaaggactgtggttaatttattcaaggccatataccaa
atgtggtccatttcttatcgggcttcttctaggatataccactgtttccagtaaatatat
aatgtctgatgctttaaccaagatagtcttccgttccagtctctttgtcgcaatcgccac
aatctacgcaattctcccagaatactggaacccaaatgctggaaatactctttataatac
agtttacacggcagtattccgatctgtattcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCACTATTACCACTATAATTGCC 230 613 768 Antisense
TATTACCACTATAATTGCCTCTATG 593 663 774 Antisense
TCCGTGCGGGTTACTGTACCGCCTA 52 589 803 Antisense
TGCGGGTTACTGTACCGCCTATGGA 370 553 807 Antisense
TACTGTACCGCCTATGGAACTTGCA 399 645 814 Antisense
GTACCGCCTATGGAACTTGCAACCA 124 459 818 Antisense
ACAATCTACGCAATTCTCCCAGAAT 243 115 1066 Antisense
GGAACCCAAATGCTGGAAATACTCT 278 529 1094 Antisense
ATACAGTTTACACGGCAGTATTCCG 581 23 1124 Antisense
TACACGGCAGTATTCCGATCTGTAT 450 641 1132 Antisense
CGGCAGTATTCCGATCTGTATTCGC 106 243 1136 Antisense
Sequence Source Affymetrix Proprietary Database