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[181501_at]

Description W07A12.6 /REP_DB=WormBase Gene ID /WP=CE03797 /TR=Q9XVW0 /GB=CAA92707.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 20.8
(-3)
A 		35
(3)
A 		24.9
(-1.3)
A 		34.4
(2.7)
A 		14
B 49.6
(-0.9)
A 		54.2
(1.1)
A 		44.8
(-3)
A 		58.7
(3)
A 		14
C 51.3
(0.5)
A 		80.6
(3)
A 		39.3
(-0.5)
A 		9.2
(-3)
A 		71
avr 40.6
(-1.3) 		56.6
(3) 		36.3
(-2.4) 		34.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 46.1
(1)
A 		45.9
(1)
A 		60
(2.6)
A 		36.5
(-0.1)
A 		63.6
(3)
A 		10.7
(-3)
A 		53
B 49.9
(-0.9)
A 		60.5
(0)
A 		29.1
(-2.7)
A 		49.8
(-0.9)
A 		94.7
(3)
A 		26.2
(-3)
A 		69
C 50.7
(-0.1)
A 		82.8
(3)
A 		61.5
(0.9)
A 		51.9
(-0)
A 		63.7
(1.1)
A 		21.5
(-3)
A 		61
avr 48.9
(0.2) 		63.1
(1.8) 		50.2
(0.4) 		46.1
(-0.1) 		74
(3) 		19.5
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.6
(3)
A 		7.6
(3)
A 		6.5
(0.5)
A 		5
(-3)
A 		3
B 15.8
(3)
A 		13.4
(0.3)
A 		10.4
(-3)
A 		12.5
(-0.7)
A 		5
C 17
(1.3)
A 		23.2
(3)
A 		13.7
(0.4)
A 		1.5
(-3)
A 		22
avr 13.5
(2.1) 		14.7
(3) 		10.2
(-0.2) 		6.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8.5
(-0.9)
A 		16.3
(2)
A 		13.1
(0.8)
A 		9.3
(-0.6)
A 		19.2
(3)
A 		2.6
(-3)
A 		17
B 17.4
(-1)
A 		20.1
(-0.5)
A 		7.1
(-3)
A 		13.2
(-1.8)
A 		38.5
(3)
A 		9.8
(-2.5)
A 		31
C 18.8
(0.8)
A 		25.3
(3)
A 		15.7
(-0.2)
A 		10.4
(-1.9)
A 		20.6
(1.4)
A 		7.2
(-3)
A 		18
avr 14.9
(-0.4) 		20.6
(1.3) 		12
(-1.3) 		11
(-1.6) 		26.1
(3) 		6.5
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3601
Sequence Type Exemplar sequence
Representative Public ID W07A12.6 NCBI
Target Description W07A12.6 /REP_DB=WormBase Gene ID /WP=CE03797 /TR=Q9XVW0 /GB=CAA92707.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063552 NCBI Caenorhabditis elegans W07A12.6 (W07A12.6) mRNA, complete cds. 11/11 A 
SNAP00000000168 ENSEMBL cdna:SNAP chromosome:CEL140:II:9158046:9160269:1 11/11 None
GENEFINDER00000000174 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9158046:9159784:1 11/11 None
W07A12.6 ENSEMBL cdna:known chromosome:CEL140:II:9158046:9159494:1 gene:W07A12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9158042-9159491(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07A12.6
Entrez Gene 189275 Entrez gene
SwissProt Q9XVW0 EMBL-EBI
WormBase CE35050 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92707 Hypothetical protein W07A12.6 [Caenorhabditis elegans] ref|NP_495953.2| W07A12.6 [Caenorhabditis elegans] 0.0
blast CAA92706 Hypothetical protein W07A12.7 [Caenorhabditis elegans] ref|NP_495954.1| Temporarily Assigned Gene name family member (tag-323) [Caenorhabditis elegans] 0.0
blast CAE57892 Hypothetical protein CBG00938 [Caenorhabditis briggsae] 0.0
blast CAA92706 Hypothetical protein W07A12.7 [Caenorhabditis elegans] ref|NP_495954.1| Temporarily Assigned Gene name family member (tag-323) [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.7E-44
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.0E-37
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.8E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495953.2 8 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391
W07A12.6 8 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391
SNAP00000000168 10 21-43,113-135,160-179,217-239,246-268,301-323,336-354,369-391,404-423,438-460
GENEFINDER00000000174 10 13-35,117-139,171-193,203-225,232-254,287-309,322-340,355-377,390-409,424-446
Sequence
Target Sequence 
>C. ELEGANS:181501_AT
gtgtcgtcgtgtgggttttggaacattatctcacttttcacatttacgggaaacttacaa
acatcacctacttgtatgacatatatatggtatttgggacttgacatgcaactttacatg
gttgcttcaatcttcttgagtcttcttcacaagtctccaaaacggggaattgttctcact
attaccactataattgcctctatgttcatccgtgcgggttactgtaccgcctatggaact
tgcaaccacagtgatgtggatgtagcgtttataacaaaaccaggacaagatcccgcagtt
ttagcaagatcttatgaaggactgtggttaatttattcaaggccatataccaaatgtggt
ccatttcttatcgggcttcttctaggatataccactgtttccagtaaatatataatgtct
gatgctttaaccaagatagtcttccgttccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGTCGTGTGGGTTTTGGAACA 138 487 595 Antisense
TTATCTCACTTTTCACATTTACGGG 97 679 620 Antisense
GGGAAACTTACAAACATCACCTACT 35 495 642 Antisense
GTTGCTTCAATCTTCTTGAGTCTTC 415 439 715 Antisense
TTGAGTCTTCTTCACAAGTCTCCAA 446 705 730 Antisense
GGGGAATTGTTCTCACTATTACCAC 179 497 758 Antisense
GGACAAGATCCCGCAGTTTTAGCAA 34 527 877 Antisense
AAATGTGGTCCATTTCTTATCGGGC 135 121 946 Antisense
TCGGGCTTCTTCTAGGATATACCAC 475 605 965 Antisense
CTAGGATATACCACTGTTTCCAGTA 618 211 976 Antisense
ACCAAGATAGTCTTCCGTTCCAGTC 418 83 1024 Antisense
Sequence Source Affymetrix Proprietary Database