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[181500_at]

Description T02H6.1 /REP_DB=WormBase Gene ID /WP=CE23942 /TR=Q9N5E2 /GB=AAF39968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_total > 39      4grp_total > 42      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 224.2
(-2.6)
P 		259.5
(0.1)
P 		218.8
(-3)
P 		297.3
(3)
P 		79
B 244.7
(1.9)
P 		222
(-0.6)
P 		201
(-3)
P 		254.2
(3)
P 		53
C 219
(-0.9)
P 		280.7
(2.1)
P 		299.7
(3)
P 		176.1
(-3)
P 		124
avr 229.3
(-3) 		254.1
(3) 		239.8
(-0.5) 		242.5
(0.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 123.1
(-0.5)
P 		159
(1.9)
P 		86.8
(-2.9)
P 		134.2
(0.3)
P 		84.6
(-3)
P 		175.5
(3)
P 		91
B 96.7
(-2.3)
P 		87.7
(-3)
P 		96.8
(-2.3)
P 		96.1
(-2.4)
P 		167.8
(3)
P 		116.9
(-0.8)
P 		80
C 190
(3)
P 		129.6
(-1.3)
P 		104.8
(-3)
P 		116.3
(-2.2)
A 		183.5
(2.5)
P 		110.7
(-2.6)
P 		85
avr 136.6
(1.9) 		125.4
(0.6) 		96.1
(-3) 		115.5
(-0.6) 		145.3
(3) 		134.4
(1.7) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 81.6
(3)
P 		56.3
(-1)
P 		57.2
(-0.8)
P 		43.5
(-3)
P 		38
B 78
(3)
P 		54.8
(-1.4)
P 		46.6
(-3)
P 		54.2
(-1.5)
P 		31
C 72.5
(0.4)
P 		80.7
(1.1)
P 		104.5
(3)
P 		29.7
(-3)
P 		75
avr 77.4
(3) 		63.9
(0.7) 		69.4
(1.6) 		42.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 22.7
(-2.4)
P 		56.6
(3)
P 		18.9
(-3)
P 		34
(-0.6)
P 		25.5
(-1.9)
P 		42.7
(0.8)
P 		38
B 33.7
(-1.6)
P 		29.2
(-2.2)
P 		23.5
(-3)
P 		25.4
(-2.7)
P 		68.2
(3)
P 		43.6
(-0.3)
P 		45
C 70.4
(3)
P 		39.5
(-0.9)
P 		26.7
(-2.6)
P 		23.4
(-3)
A 		59.4
(1.6)
P 		37.1
(-1.3)
P 		47
avr 42.3
(1.1) 		41.8
(1) 		23
(-3) 		27.6
(-2) 		51
(3) 		41.1
(0.9) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5979
Sequence Type Exemplar sequence
Representative Public ID T02H6.1 NCBI
Target Description T02H6.1 /REP_DB=WormBase Gene ID /WP=CE23942 /TR=Q9N5E2 /GB=AAF39968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182230(11), NM_061396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182230 NCBI Caenorhabditis elegans T02H6.1b (T02H6.1) mRNA, complete cds. 11/11 None
NM_061396 NCBI Caenorhabditis elegans T02H6.1a (T02H6.1) mRNA, complete cds. 11/11 None
T02H6.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:709381:723693:1 gene:T02H6.1 11/11 None
T02H6.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:709387:723700:1 gene:T02H6.1 11/11 None
T02H6.1a ENSEMBL cdna:known chromosome:CEL140:II:709395:723528:1 gene:T02H6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036810 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036817 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:709394-723528(+) 96.91 100.0
Public Domain and Genome References
Ensembl T02H6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60497 Hypothetical protein T02H6.1b [Caenorhabditis elegans] ref|NP_872030.1| T02H6.1b [Caenorhabditis elegans] 0.0
blast AAF39968 Hypothetical protein T02H6.1a [Caenorhabditis elegans] ref|NP_493797.1| T02H6.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 1.20000004768372
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 2.20000004768372
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.014
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0025
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0042
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0028
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.3E-4
Sequence
Target Sequence 
>C. ELEGANS:181500_AT
atcaacgaggagcactttgccaccggatctgctgatggaagcattgcattatggtcattc
tggaagaagcgtgctcttcacgtccgaaaacaggctcacggaacacaaaatggtagtgga
cgatggattgtggcgctggcggtgttaccgtattctgacctgctcgcctctggatccaac
gaaggagagcttaaactgtggaaaatttcggaaaatttccgtcaactgaccccattcttc
tcctacagtatccccggattcattaattcgatcaatttcgctccgaatggaaaatcgatt
gttgttggagccggtaaagagcacaaggatggaaggtggtggatggaagtgataataatg
acgtcaccattggtgataagacggcttctggaacagtttcaggggcttctgctggtggtg
gtggaggaatcgaatcgggtgatgaatctgaagaagaagaagaagagctggaggaagagc
tggaagaggaggaagaagaaattgaggaataagattcctcactgcctgcgcctccgccta
cctacctacacacatcaatctctcctccaaataaccagttctcttatcaaattgttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACGAGGAGCACTTTGCCACCG 246 27 1036 Antisense
GAAGCATTGCATTATGGTCATTCTG 113 343 1073 Antisense
TGGAAGAAGCGTGCTCTTCACGTCC 213 547 1096 Antisense
TCTTCACGTCCGAAAACAGGCTCAC 108 617 1110 Antisense
GTGGACGATGGATTGTGGCGCTGGC 599 489 1151 Antisense
GCTGGCGGTGTTACCGTATTCTGAC 6 295 1170 Antisense
GTATCCCCGGATTCATTAATTCGAT 149 453 1283 Antisense
ACAGTTTCAGGGGCTTCTGCTGGTG 166 107 1428 Antisense
AGGAATAAGATTCCTCACTGCCTGC 324 55 1540 Antisense
CAATCTCTCCTCCAAATAACCAGTT 475 181 1591 Antisense
ACCAGTTCTCTTATCAAATTGTTAC 159 87 1609 Antisense
Sequence Source Affymetrix Proprietary Database